Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13540 242 / 2e-79 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT3G61250 209 / 7e-66 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G38620 197 / 2e-61 MYB AtMYB4 myb domain protein 4 (.1) AT3G02940 198 / 3e-61 MYB ATMYB107 myb domain protein 107 (.1) AT1G22640 196 / 3e-61 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G21440 198 / 6e-61 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G09460 194 / 9e-61 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT2G16720 193 / 6e-60 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT5G10280 194 / 1e-59 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT5G15310 193 / 2e-59 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G005100 [exp] 504 / 0 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.013G056500 [exp] 271 / 6e-90 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.013G056400 [exp] 267 / 2e-88 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.019G036160 [exp] 267 / 2e-88 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.019G036400 [exp] 263 / 6e-87 AT3G13540 236 / 3e-77 myb domain protein 5 (.1) Potri.019G036340 [exp] 260 / 1e-85 AT3G13540 240 / 6e-79 myb domain protein 5 (.1) Potri.002G173900 [exp] 222 / 6e-71 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.014G100800 [exp] 218 / 2e-69 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.003G144300 [exp] 207 / 3e-65 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039173 [exp] 238 / 2e-77 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 232 / 5e-75 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10030378 [exp] 207 / 4e-65 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 200 / 3e-62 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10009448 [exp] 196 / 5e-61 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10000411 [exp] 196 / 9e-61 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10033438 [exp] 196 / 1e-60 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10041142 [exp] 196 / 2e-60 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10000470 [exp] 195 / 2e-60 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10036472 [exp] 195 / 3e-60 AT5G10280 307 / 1e-103 myb domain protein 92 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G219900.1 pacid=42784858 polypeptide=Potri.003G219900.1.p locus=Potri.003G219900 ID=Potri.003G219900.1.v4.1 annot-version=v4.1 ATGAGAAAGCCAACTTCATCTACAGCTACAGCTGAAGCAGCGGCGGCAGGAGGAGGACCAGCGGCAAAATCTACTCCGTGTTGCATCAAGGTAGGGTTAA AGAGAGGACCATGGACACCTGAAGAAGATGAACTTCTAGCTAACTATATCAAGAAAGAAGGTGAAGGTCGGTGGCGAACTTTACCCAAGAAAGCTGGTCT TCTCCGCTGTGGCAAAAGCTGCCGTCTCCGCTGGATGAACTACCTCCGCCCTTCTGTTAAACGTGGCCAGATCTCCCCTGATGAAGAAGATCTCATTCTC CGCCTCCATCGCCTCCTAGGCAATAGGTGGTCATTGATAGCTGGGAGAATCCCAGGGCGTACAGACAATGAGATAAAGAATTACTGGAACACTCACCTGA GTAAGAAGTTGATAAGCCAAGGAATTGATCCAAGAACCCACAAGCCTCTCATCAATCCTCAATCTTTTGATCAATCCAAACCTTCTTCGTCGAAAGCGAA CCACCTGCAAGAAAGCCTAAAAGAGCCTATTAAGATTGCTTCTTCTGGTTTGGAAGAAACTACCAGTGGCAGTGCTCACATAATCAGCAACAAAGAGAAT GGGTATTTTCAAAACAACAGTAATGCACACCTGGGTGATCAGTATTACACGGACCATTTTATTGCAAGTCGTGGCTACACAAGTTTGCTGAATTATGATG GTTCTTTTGGGACGGATTTGAGAGGTAATCAAAGGCTTGGTAATGGAGAAGCTGAAGATATCAATTCTGGCACAGAAGATGTGTTTTCCTTCCTCAATTC ACTCATAAATGAGGAGGCTTTCCAACAACACCAGATCTTTAATGAGCCTAATGTGAATAGTGCACCAGCCAGTACAGATCCTTTGTTTCCAATTGCTGCC GCAACATCATTTGGACTTAGTACTGGCTGGGAATCTACTCTCATGCCTTCTGCTCTTGATCAAAATGATTCGAAATAG
AA sequence Show only first row Show all	>Potri.003G219900.1 pacid=42784858 polypeptide=Potri.003G219900.1.p locus=Potri.003G219900 ID=Potri.003G219900.1.v4.1 annot-version=v4.1 MRKPTSSTATAEAAAAGGGPAAKSTPCCIKVGLKRGPWTPEEDELLANYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYLRPSVKRGQISPDEEDLIL RLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLINPQSFDQSKPSSSKANHLQESLKEPIKIASSGLEETTSGSAHIISNKEN GYFQNNSNAHLGDQYYTDHFIASRGYTSLLNYDGSFGTDLRGNQRLGNGEAEDINSGTEDVFSFLNSLINEEAFQQHQIFNEPNVNSAPASTDPLFPIAA ATSFGLSTGWESTLMPSALDQNDSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.003G219900 [exp]	0	1
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	2.23	0.9030
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G049000 [exp]	2.82	0.9026
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Potri.007G116100 [exp]	8.00	0.8864
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.008G182000 [exp]	10.39	0.8903
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.008G122200 [exp]	11.40	0.8824
AT1G21000			PLATZ transcription factor fam...		Potri.005G259000 [exp]	13.22	0.8966
AT1G72690			unknown protein		Potri.017G119600 [exp]	14.00	0.8631
AT2G17650			AMP-dependent synthetase and l...		Potri.005G099500 [exp]	14.28	0.8601
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048900 [exp]	15.00	0.8482
AT2G47820			unknown protein		Potri.008G210200 [exp]	15.29	0.8780

Compare expression of checked genes

Potri.003G219900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.