Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55360 716 / 0 Protein of Unknown Function (DUF239) (.1) AT5G56530 714 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT3G13510 707 / 0 Protein of Unknown Function (DUF239) (.1) AT2G44210 569 / 0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G18460 473 / 7e-166 Protein of Unknown Function (DUF239) (.1) AT1G10750 467 / 5e-163 Protein of Unknown Function (DUF239) (.1) AT2G44220 454 / 4e-159 Protein of Unknown Function (DUF239) (.1) AT1G23340 454 / 8e-159 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G70550 450 / 3e-157 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G50150 447 / 5e-156 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G003800 [exp] 836 / 0 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 652 / 0 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 495 / 2e-174 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 488 / 5e-172 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 478 / 2e-167 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.010G044300 [exp] 478 / 3e-167 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.012G088300 [exp] 445 / 5e-155 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 444 / 6e-154 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 284 / 4e-92 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013410 [exp] 738 / 0 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 652 / 0 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 493 / 2e-173 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 479 / 2e-167 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 462 / 9e-161 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 458 / 6e-159 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 447 / 1e-155 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 421 / 6e-146 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 389 / 2e-133 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 386 / 2e-132 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [poplar] [flax] Neprosin Neprosin PF14365 [poplar] [flax] Neprosin_AP Neprosin activation peptide
Representative CDS sequence Show only first row Show all	>Potri.003G221200.1 pacid=42785084 polypeptide=Potri.003G221200.1.p locus=Potri.003G221200 ID=Potri.003G221200.1.v4.1 annot-version=v4.1 ATGGGTTCTTGCGGATGTGGTGGTGGTGCTCATTTCAGCAGAAGCATAGTGTTGGTTTTGGTTTTTTGCTTATTGGGTTTGATTTCAATAACTTGCGCTG CTAGATTGAGTGTGTCAAGACAGAAACTTGAGGTTCAAAAACACTTGAACCGCTTGAACAAGCCAGCTGTTAAAAGCATTGAGAGTCCAGACGGGGATAT AATTGACTGTGTTCACATGTCTCATCAGCCAGCTTTTGATCACCCCTACCTCAAAGACCACAAGATTCAGATGAGACCTAGTTACCATCCAGAAGGGCGG GTCTTTGATGATAGCAAGGTGTCTACAGAATCCAAAGAAAGAAAAAATCCTATCACTCAGCTGTGGCATGTGAATGATAAATGCCCCGAGGGTACTATAC CCATTAGAAGAACAAAGGAGGATGATGTTTTAAGAGCTAGCTCTGTGAAAAGATATGGCAGGAAGAAGCACAGAGCCATCCCCCAGCCGAGGTCCGCAGA TCCTGATCTCATCAATGAAAGTGGCCACCAGCATGCAATAGCTTATGTGGAAGGGGATAAGTACTATGGTGCAAAAGCAACCATCAACGTATGGGAACCC AAAATTCAACAACCTAATGAATTCAGCTTGTCTCAGCTGTGGATATTGGGAGGTTCCTTTGGTCAAGATCTCAATAGCATTGAAGCTGGTTGGCAGGTTA GTCCAGATCTGTATGGTGATAACAACACAAGGCTCTTCACCTACTGGACTAGTGATGCATATCAAGCCACGGGTTGCTACAATCTCCTTTGCTCAGGCTT CATTCAAATCAACAGTGAGATTGCAATGGGTGCAAGCATCTCTCCTGTTTCTGGCTACCGCAATTCCCAATATGATATTAGTATACTTGTCTGGAAGGAT CCAAAGGAGGGGCACTGGTGGATGCAATTCGGCAATGATTATGTGCTGGGTTATTGGCCTTCTTTCCTGTTCTCATACCTAGCAGACAGTGCTTCCATGA TTGAGTGGGGAGGTGAGGTGGTGAACTCAGAGCCTGATGGTCGGCACACCTCCACTCAAATGGGCAGTGGTCGTTTCCCCGAGGAAGGGTTTGGTAAAGC AAGTTACTTCAGGAATATTCAAGTTGTTGACTCCACGAACAATCTCAAGGCCCCTAAAGGGATTGGCACCTTCACTGAGAAATCTAACTGCTATGATGTT CAAACTGGCAATAATGGGGATTGGGGCCGTTACTTTTATTATGGAGGGCCTGGTAGAAATGAAAACTGTCCATGA
AA sequence Show only first row Show all	>Potri.003G221200.1 pacid=42785084 polypeptide=Potri.003G221200.1.p locus=Potri.003G221200 ID=Potri.003G221200.1.v4.1 annot-version=v4.1 MGSCGCGGGAHFSRSIVLVLVFCLLGLISITCAARLSVSRQKLEVQKHLNRLNKPAVKSIESPDGDIIDCVHMSHQPAFDHPYLKDHKIQMRPSYHPEGR VFDDSKVSTESKERKNPITQLWHVNDKCPEGTIPIRRTKEDDVLRASSVKRYGRKKHRAIPQPRSADPDLINESGHQHAIAYVEGDKYYGAKATINVWEP KIQQPNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSEIAMGASISPVSGYRNSQYDISILVWKD PKEGHWWMQFGNDYVLGYWPSFLFSYLADSASMIEWGGEVVNSEPDGRHTSTQMGSGRFPEEGFGKASYFRNIQVVDSTNNLKAPKGIGTFTEKSNCYDV QTGNNGDWGRYFYYGGPGRNENCP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	0	1
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.012G016000 [exp]	1.41	0.8026
AT1G70280			NHL domain-containing protein ...		Potri.008G147700 [exp]	3.00	0.7662
AT2G18880		VIL3, VEL2	VIN3-like 3, vernalization5/VI...		Potri.002G111600 [exp]	6.24	0.7577
AT3G56370			Leucine-rich repeat protein ki...		Potri.019G058600 [exp]	6.32	0.7890
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	7.34	0.7953
AT4G00752			UBX domain-containing protein ...		Potri.014G075600 [exp]	10.19	0.8005
AT3G08880			unknown protein		Potri.016G122350 [exp]	11.66	0.7280
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.018G068600 [exp]	12.04	0.7834
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.006G071500 [exp]	12.12	0.7701
AT2G23300			Leucine-rich repeat protein ki...		Potri.007G048800 [exp]	12.80	0.6866

Compare expression of checked genes

Potri.003G221200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.