Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55570 856 / 0 SKS12 SKU5 similar 12 (.1) AT3G13390 841 / 0 SKS11 SKU5 similar 11 (.1) AT3G13400 827 / 0 SKS13 SKU5 similar 13 (.1) AT1G55560 827 / 0 SKS14 SKU5 similar 14 (.1) AT1G21860 592 / 0 SKS7 SKU5 similar 7 (.1) AT1G76160 591 / 0 SKS5 SKU5 similar 5 (.1) AT5G66920 588 / 0 SKS17 SKU5 similar 17 (.1) AT1G21850 578 / 0 SKS8 SKU5 similar 8 (.1) AT4G22010 577 / 0 SKS4 SKU5 similar 4 (.1) AT1G41830 572 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G000600 [exp] 1057 / 0 AT1G55570 850 / 0.0 SKU5 similar 12 (.1) Potri.001G000500 [exp] 1009 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.004G180500 [exp] 606 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.007G038300 [exp] 605 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.005G247700 [exp] 591 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 588 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 582 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.002G227600 [exp] 580 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 562 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010338 [exp] 891 / 0 AT1G55570 815 / 0.0 SKU5 similar 12 (.1) Lus10021864 [exp] 889 / 0 AT1G55570 814 / 0.0 SKU5 similar 12 (.1) Lus10036492 [exp] 857 / 0 AT3G13400 808 / 0.0 SKU5 similar 13 (.1) Lus10010358 [exp] 854 / 0 AT3G13400 807 / 0.0 SKU5 similar 13 (.1) Lus10010337 [exp] 853 / 0 AT1G55570 803 / 0.0 SKU5 similar 12 (.1) Lus10021863 [exp] 657 / 0 AT1G55570 631 / 0.0 SKU5 similar 12 (.1) Lus10016770 [exp] 603 / 0 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10022465 [exp] 599 / 0 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10035282 [exp] 569 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10034560 [exp] 568 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.003G224100.1 pacid=42785487 polypeptide=Potri.003G224100.1.p locus=Potri.003G224100 ID=Potri.003G224100.1.v4.1 annot-version=v4.1 ATGGCTGGGGTGATGTTTTTGGTTTTGCTCTGCATCTCTGCAGGAACAATGTTGGGAGTCCGGGGTGAAGACCCTTACTTGTTCTTCACATGGAACGTCA CCTACGGCACCCTCTCTCCCTTGGGGGTTCCCCAGCAGGTGATTCTCATCAATAATCAATTCCCCGGACCCAATATCAACTCCACCAGTAATAACAACAT TGTCATTAATGTCTTCAATAACCTCGACGAGCCCTTCCTTTTGACATGGAGCGGCATCCAGCAGAGGAAGAATTCATGGCAAGATGGAGTGCTTGGTACC AACTGCCCCATCCTTCCTGGAACCAATTACACCTACCACTTCCAGGTTAAGGACCAGATTGGTAGCTACATCTACTACCCAACCACAGGCATGCACCGTG CAACTGGTGGTTTTGGTGGCCTCCGCATCAATAGTCGTCTACTCATCCCTGTCCCTTATGCTGATCCCGAGGATGATTACACTGTCATTCTCAATGACTG GTACTCTAAGAGCCACACTGCTCTCCAGAAGCTCTTGGATAGCGGTCGCACTCTTGCAAGGCCTGATGGTGTCCTCGTCAATGGCAAGAACGCCAAGGGA GATGGCAAGGATGAGCCTCTCTTCACAATGAAGCCCGGAAAGACATACAAGTACAGAATCTGCAATGCTGGGCTCAAGAATACTCTCAATTTCAGGATCC AAGGCCATACAATGAAGCTTGTGGAAATGGAGGGATCCCATGTGGTGCAAAACGTGTACGAGTCACTCGATGTCCATGTTGGACAATGCTTCAGTGTCCT CGTGACAGCCAACCAAGATCCCAAAGACTACTACATGGTGGCTTCCACCCGATTCAATAAGCAGGTTCTTACTGGCAAGGGCATCATCCGTTATACCAAT GGCAAGGGTCCAGCATCACCTGAGCTCCCTGAGGCACCAGTTGGATGGGCTTGGTCTCTCAATCAATTCCGTTCCTTCCGCTGGAACCTTACAGCCAGTG CTGCTAGGCCTAACCCTCAAGGCTCCTACCATTATGGTTCCATCAACATTACCCGCACCATTAAGCTCATAAATTCGGCTAGCCAAGAAGGTGGCAAGCT TCGCTATGCCCTCAATGGAGTATCTCACGTTAATCCAGAAACACCACTCAAACTTGCTGAGTACTATGGGGTCGCAGACAAGGTGTTCAAGTATGACACC ATCCTAGACAGTCCACAGGCCAACGTTGCTAATGCTAAGATTGTCACACAGCCCAATGTCCTTAACCTCACCTTCCGTAACTTCGTTGAGATCATCTTTG AGAACCACGAGAAGAGCATGCAATCATATCACTTAGATGGTTATTCTTTCTTTGCAGTCGCCGTGGAGCCAGGCACTTGGACCCCTGAGAAGAGAAAGCA CTACAATCTCCTTGACGCAGTGAGTAGGACAACCGTTCAGGTCTACCCCAAATCCTGGGCTGCCATCCTTTTGACATTCGACAATGCTGGATTGTGGAAC ATCAGGTCAGAGATGTGGGAAAGAGCTTATCTAGGACAACAGCTGTATGCCAGTGTTCTTTCCCCTGCACGCTCCCTCAGGGACGAGTACAATCTTCCCG ATAATTCTTTACTATGTGGCATCGTCAAGGACATGCCAAAACCCGCACCTTACAGCATCTAA
AA sequence Show only first row Show all	>Potri.003G224100.1 pacid=42785487 polypeptide=Potri.003G224100.1.p locus=Potri.003G224100 ID=Potri.003G224100.1.v4.1 annot-version=v4.1 MAGVMFLVLLCISAGTMLGVRGEDPYLFFTWNVTYGTLSPLGVPQQVILINNQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVLGT NCPILPGTNYTYHFQVKDQIGSYIYYPTTGMHRATGGFGGLRINSRLLIPVPYADPEDDYTVILNDWYSKSHTALQKLLDSGRTLARPDGVLVNGKNAKG DGKDEPLFTMKPGKTYKYRICNAGLKNTLNFRIQGHTMKLVEMEGSHVVQNVYESLDVHVGQCFSVLVTANQDPKDYYMVASTRFNKQVLTGKGIIRYTN GKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGSINITRTIKLINSASQEGGKLRYALNGVSHVNPETPLKLAEYYGVADKVFKYDT ILDSPQANVANAKIVTQPNVLNLTFRNFVEIIFENHEKSMQSYHLDGYSFFAVAVEPGTWTPEKRKHYNLLDAVSRTTVQVYPKSWAAILLTFDNAGLWN IRSEMWERAYLGQQLYASVLSPARSLRDEYNLPDNSLLCGIVKDMPKPAPYSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55570		SKS12	SKU5 similar 12 (.1)		Potri.003G224100 [exp]	0	1
AT5G55690	MADS		MADS-box transcription factor ...		Potri.001G214900 [exp]	28.39	0.5006
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.003G052600 [exp]	45.05	0.5296
					Potri.014G132050 [exp]	47.24	0.4815
					Potri.006G070200 [exp]	52.97	0.4889
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	68.11	0.4844
AT1G55740		RS1, ATSIP1	raffinose synthase 1, seed imb...		Potri.011G166700 [exp]	86.55	0.4982	AGA1.1
					Potri.003G185666 [exp]	100.30	0.4415
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.004G043600 [exp]	131.75	0.4437

Compare expression of checked genes

Potri.003G224100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.