Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 566 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 534 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 533 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28510 531 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28520 470 / 4e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 448 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 444 / 4e-153 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 416 / 3e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 394 / 9e-134 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 342 / 2e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G012700 [exp] 924 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 853 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 648 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 542 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 541 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 541 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 529 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 529 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 457 / 5e-160 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015354 [exp] 616 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 581 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 557 / 0 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 548 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 510 / 3e-178 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 502 / 6e-175 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005256 [exp] 496 / 1e-170 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 489 / 3e-170 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10032188 [exp] 451 / 1e-155 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014497 [exp] 436 / 2e-149 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.004G012601.1 pacid=42794816 polypeptide=Potri.004G012601.1.p locus=Potri.004G012601 ID=Potri.004G012601.1.v4.1 annot-version=v4.1 ATGTGGACTGAGCTAAGCGCCACCATATCTAGTCTAGCGGTTGCTTTCTTCATGTTTGAAAAATATTTGAACTTTTTTCCTTATACAATTCGTTGGTATG CTGAAAGAAATTTTCGGAAGGTGGTTAATTTTGTGAACCCTTATGTCGAAATTTCTTTCCATGAATTCACAAGTGAACGCCTCAAGCGTAGCGATGCCTT CTTTGCCATTCAAAACTATCTCGGCACCATCTCTACCGAGAATGCTAGGAGACTCAAGGCTGATGTTGTCAAAGACAGCCAATCTGTAGTCCTCAGCATG GATGCTAATGAAGAAGTTACCGATGTTTTCAACGGGGTCAGGGTCTGGTGGGCATCAGGCAAAATTCCCCCCCAATCAAAATCCATTTCTTTGTTTCCTG GCTCTGAAGAGAAGAGGTATTACAAGCTCACTTTCCATAAACATTATCGGGAAATCATCACCAAGTCTTATGTACAACATGTTCTGAAAAAAGGAAAGGA AATTGCAGTGAAGAACAGACAGAGGATGCTGTACACAAACAATCCTAGCAAGGACTGGCACGGGTGGAAGTCTACCAAGTGGGGCAATATAGTGTTTGAG CATCCTTCTACATTCGATACTTTGGCAATGGACACAGCGAAGAAAGAAGAGATCAAGAAGGACCTAATCAAGTTCAGCAAAGGGAAAGACTATTACGCAA AAATCGGGAAGGCCTGGAAGCGTGGTTATCTCCTTTATGGTCCTCCCGGAACTGGAAAATCATCTATGATTGCTGCCATGGCTAATTTATTGGATTATGA TGTTTATGATTTGGAGTTGACAACTATAAAGGACAACAGCGAGTTGCGGAAGCTACTCATTGAAACGAAAGGAAAGTCTATTATTGTGATTGAGGATATT GATTGCTCGCTTGATCTTACAGGTCAGAGAAAGAAAAGGAAGGAGAAAGATGATGATGAAGCAGACAAAGAGAAGGATCCGATTTCCAAGATGAAAAGGG AGGCAGAAGAAGAAAGCGGCAGCGGCAGTAAGGTTACTTTATCAGGGCTTTTGAACGTTATTGATGGAATTTGGTCTGCTTGTGGTGGAGAAAGGATTAT TATATTCACTACCAATTACGTGGACAAACTCGATCCTGCTTTGATTAGGAGGGGGAGGATGGATAAGCATATAGTAATGTCATATTGCTGCTTTGAAGCA TTCAAGGTGCTAGCCAAGAATTATTTGGATATTGAATCGCATGAATTATTTGGGAAAATCGAAGAGTTGTTTGTTGAGACAAAGATGTCCCCAGCTGATG TTGCTGATAATTTGATGCCAAAGTCTGACGAACAAGATGAGGAGACTTGTTTGAAGAGATTGGTTGAGGCTCTTGAAGCTTCAAAGGAGGAAGCTAGAAA GAAATCAGAAGAAGAAGCAATGCTGAAGACCAAGGATGGAGTAGTCACTGAAGGTTAG
AA sequence Show only first row Show all	>Potri.004G012601.1 pacid=42794816 polypeptide=Potri.004G012601.1.p locus=Potri.004G012601 ID=Potri.004G012601.1.v4.1 annot-version=v4.1 MWTELSATISSLAVAFFMFEKYLNFFPYTIRWYAERNFRKVVNFVNPYVEISFHEFTSERLKRSDAFFAIQNYLGTISTENARRLKADVVKDSQSVVLSM DANEEVTDVFNGVRVWWASGKIPPQSKSISLFPGSEEKRYYKLTFHKHYREIITKSYVQHVLKKGKEIAVKNRQRMLYTNNPSKDWHGWKSTKWGNIVFE HPSTFDTLAMDTAKKEEIKKDLIKFSKGKDYYAKIGKAWKRGYLLYGPPGTGKSSMIAAMANLLDYDVYDLELTTIKDNSELRKLLIETKGKSIIVIEDI DCSLDLTGQRKKRKEKDDDEADKEKDPISKMKREAEEESGSGSKVTLSGLLNVIDGIWSACGGERIIIFTTNYVDKLDPALIRRGRMDKHIVMSYCCFEA FKVLAKNYLDIESHELFGKIEELFVETKMSPADVADNLMPKSDEQDEETCLKRLVEALEASKEEARKKSEEEAMLKTKDGVVTEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012601 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012700 [exp]	1.00	0.9997
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012500 [exp]	1.73	0.9598
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270700 [exp]	3.87	0.9327
AT4G35840			RING/U-box superfamily protein...		Potri.005G244800 [exp]	6.48	0.9081
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.014G097900 [exp]	8.71	0.9349
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Potri.015G069600 [exp]	9.38	0.9148	EDS1.2
AT3G46400			Leucine-rich repeat protein ki...		Potri.012G002900 [exp]	17.23	0.8985
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091500 [exp]	18.33	0.9286
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003600 [exp]	18.89	0.8873
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003700 [exp]	24.37	0.9026

Compare expression of checked genes

Potri.004G012601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.