Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05100 176 / 2e-53 MYB ATMYB74 myb domain protein 74 (.1) AT4G21440 174 / 2e-52 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G15310 170 / 3e-51 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G28110 168 / 3e-51 MYB ATMYB41 myb domain protein 41 (.1) AT3G23250 168 / 3e-51 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT2G31180 167 / 3e-51 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT5G54230 167 / 2e-50 MYB ATMYB49 myb domain protein 49 (.1) AT5G65230 166 / 4e-50 MYB ATMYB53 myb domain protein 53 (.1) AT4G38620 165 / 7e-50 MYB AtMYB4 myb domain protein 4 (.1) AT3G01140 166 / 4e-49 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G040300 [exp] 263 / 2e-88 AT4G38620 164 / 2e-49 myb domain protein 4 (.1) Potri.011G040200 [exp] 262 / 5e-88 AT3G23250 171 / 1e-51 myb domain protein 15 (.1.2) Potri.011G040400 [exp] 227 / 1e-73 AT2G31180 163 / 6e-49 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118200 [exp] 177 / 9e-54 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.011G041600 [exp] 177 / 2e-53 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 175 / 1e-52 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G224100 [exp] 171 / 4e-52 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.019G018200 [exp] 168 / 5e-52 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G148600 [exp] 171 / 2e-51 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039743 [exp] 170 / 4e-52 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10020085 [exp] 167 / 3e-50 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10042561 [exp] 163 / 4e-50 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10022021 [exp] 163 / 5e-50 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10006740 [exp] 169 / 8e-50 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10021871 [exp] 162 / 1e-49 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10018418 [exp] 166 / 2e-49 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10041145 [exp] 162 / 2e-49 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10041888 [exp] 161 / 6e-49 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10014784 [exp] 162 / 2e-48 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G026600.1 pacid=42793796 polypeptide=Potri.004G026600.1.p locus=Potri.004G026600 ID=Potri.004G026600.1.v4.1 annot-version=v4.1 ATGGATTTTACATGCATCAAGCTGGCGACGATGAGAAAGATTGCACATAACTCTCAGAATCTGCCTTTGAAAAGAGGGGCATGGAGTCCTGAAGAAGATC AGAAGTTGATAGCTTATATTAACAGCCATGGCATTCGGAATTGGATTGAGATGCCGAAAGCTGCCGGTTTGTTAAGGTCAGGGAAGAGTTGCAGGCTACG TTGGATGAACTACTTGAGGCCGGATATAAAGCGTGGAAACTTCAGCATGGAAGAAGTGGAAACCATACTCAAGCTGCATGGGATTCTTGGAAATAGATGG TCTGCAATTGCAGCAAAATTACCTGGAAGAACAGATAATGAGATAAAAAATTTCTGGAACACCCGCTTGAAGAAAAATTACGTAAAGAACAATATCAATA CTGCAGCGCAAGCACCGAAACTGCACGGAACACAAACATCCACAGCAGAATTCAAGAAAAGGAAGTTATGTGAAAATATTGACGTTCCACTTCCCACTGC TCCAAAAATATTGAAGCCAGAAGACTCGGAGGGCTCACCGAAGCTGCCTATCAGTTATTTTTCTTCAAGCTTTAATCTTGTGAATGATCTCATAATTAAT GAAAATCAGATCATAGAAGAGAACGTTGGATTACTTGAATCAAATGGAGAACAATGTTTATGGGGTCCGCAATTTTCAACTGAAGGTCAAACATGCAGGG TGGAGGATCATGGAGATAACTGCACAGTTGAAATGTGGGTCCAAGAACTATTGCATGGAGTCTAG
AA sequence Show only first row Show all	>Potri.004G026600.1 pacid=42793796 polypeptide=Potri.004G026600.1.p locus=Potri.004G026600 ID=Potri.004G026600.1.v4.1 annot-version=v4.1 MDFTCIKLATMRKIAHNSQNLPLKRGAWSPEEDQKLIAYINSHGIRNWIEMPKAAGLLRSGKSCRLRWMNYLRPDIKRGNFSMEEVETILKLHGILGNRW SAIAAKLPGRTDNEIKNFWNTRLKKNYVKNNINTAAQAPKLHGTQTSTAEFKKRKLCENIDVPLPTAPKILKPEDSEGSPKLPISYFSSSFNLVNDLIIN ENQIIEENVGLLESNGEQCLWGPQFSTEGQTCRVEDHGDNCTVEMWVQELLHGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05100	MYB	ATMYB74	myb domain protein 74 (.1)		Potri.004G026600 [exp]	0	1
AT5G12340			unknown protein		Potri.009G071100 [exp]	1.00	0.9755
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.009G010200 [exp]	2.44	0.9735
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.003G165000 [exp]	3.87	0.9682
AT2G33500	CO	COL14	B-box type zinc finger protein...		Potri.001G323500 [exp]	5.29	0.9555
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.010G187800 [exp]	5.47	0.9450	Pt-FAD3.3
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Potri.004G102500 [exp]	6.00	0.9401	MANG.1
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.013G129800 [exp]	8.36	0.9457
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.005G223100 [exp]	8.94	0.9438
AT3G02645			Plant protein of unknown funct...		Potri.009G085300 [exp]	9.79	0.9541
					Potri.010G150750 [exp]	14.28	0.9401

Compare expression of checked genes

Potri.004G026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.