Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61215 323 / 1e-105 BRD4 bromodomain 4 (.1) AT2G42150 133 / 4e-33 DNA-binding bromodomain-containing protein (.1) AT3G57980 123 / 9e-30 DNA-binding bromodomain-containing protein (.1) AT2G44430 79 / 3e-15 DNA-binding bromodomain-containing protein (.1) AT3G60110 78 / 5e-15 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T042048 [exp] 82 / 4e-16 AT3G60110 113 / 5e-26 DNA-binding bromodomain-containing protein (.1) Potri.003G212500 [exp] 82 / 4e-16 AT3G60110 113 / 6e-26 DNA-binding bromodomain-containing protein (.1) Potri.001G229300 [exp] 80 / 2e-15 AT2G44430 301 / 4e-93 DNA-binding bromodomain-containing protein (.1) Potri.001G013600 [exp] 79 / 2e-15 AT3G57980 127 / 2e-30 DNA-binding bromodomain-containing protein (.1) Potri.009G023100 [exp] 77 / 7e-15 AT2G44430 280 / 3e-85 DNA-binding bromodomain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011227 [exp] 356 / 7e-119 AT1G61215 288 / 7e-93 bromodomain 4 (.1) Lus10018457 [exp] 352 / 2e-117 AT1G61215 288 / 6e-93 bromodomain 4 (.1) Lus10010335 [exp] 85 / 4e-17 AT2G44430 320 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10031219 [exp] 75 / 6e-14 AT3G57980 177 / 3e-47 DNA-binding bromodomain-containing protein (.1) Lus10031796 [exp] 74 / 9e-14 AT2G44430 234 / 5e-67 DNA-binding bromodomain-containing protein (.1) Lus10021861 [exp] 61 / 1e-09 AT2G44430 147 / 6e-39 DNA-binding bromodomain-containing protein (.1) Lus10021860 [exp] 60 / 2e-09 AT2G44430 104 / 1e-24 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.004G036900.1 pacid=42795850 polypeptide=Potri.004G036900.1.p locus=Potri.004G036900 ID=Potri.004G036900.1.v4.1 annot-version=v4.1 ATGGGGACGGAGATATTAATAAACAAGTGGGGTACATGGGAGGAGCTGCTACTGGGTGGGGCCGTGATCCGGCACGGTACCCGAGATTGGAATTTGGTTG CGTCGGAGCTCCGCGCCCGAACCGTTAATTGCCCCTATACTTTCACACCCGAGATATGTAAAGCGAAGTACGAGGACTTGCAGCAACGTTACTCAGGGTG CAAGGCTTGGTTTGAAGAGCTGCGGAAGCAAAGAATGGCAGAGTTAAGGCGAGCATTAGAACAATCTGAAGGCTCAATTGGGTCACTGGAATCAAAACTT GAGATTCTCAAGGCTGAGAGAAGGGAGGATTGTCATGTCAGTTATGACTCCAGCCAGACAGAATCACCTGTGCTATTTCGGAAATGTGATGGGATTGAAT CATCCAGTAAAGAGACATCTAAGGATGGACTATCTGCTGGTAGTTTTACTCAGGATACCAAAACAAATTGGACACCTGAATGTCGAGTTGCAACTGCTAT GCCGGCTGCAGAGATGGAGATTAAGCCAGAAGTTTCAATATCCCCTGAAGAGAATAAAGTTTCAAGCATATGGAAGCTGTCAGAGAGCATATTTGCAGGA CAGGTAAGTAGTTTAAAAAGGAGGAGAGGGAAGCGAAAGCGGAAAGATTGTAGCAAGGATGTCAAGGAAGGGAGTGTTGGAGAAAGTGAGTTTTTGGGGT CAGCTGATGCTTTGTTTGCTACTCGCTGTAAAGATAATTCAACTAGCACCTCTGGTCAAATTGCAAGATGTTCTACTGTTGATGATCAATCCAGAGGTTC GAGCAAGGATGGAGCGGTGGATGTCAGGGTGATTTTTGATTCTATTGCAGAGAACAAATGTGCCTCTGTCTTTCATCGGCGTCTTGATAGCCAGAAGAGA GGAAGATATAAGAAAATGATCTTGCAGCACATGGATATTGATACCATAAGATCAAGAATTGCTAGCGGCTCCATCACAACAGCTAAAGAAATCTTTCGAG ACCTGCTTCTACTTGCTAACAATGCCTTGGTCTTTTATTCCAAGACTACTCGTGAATACAAATCTGCACTGCTTCTGAGAGACATCGTCACCAAAAGTCT GCAGCAGAATCTCAAGAATTATATTACCAAGACTACGATTACCTTTCTCTCAACCACATCACCTTTGCTTAATCCTCCTGTCAAACCTCAATGTGCTCGT CCTGGTAATGGAAAATTGTCAGGAAAGGTGACCAAAGCTGGGAAGCTTGTTGCTAAAACTCCAAACACGGGTAAAAGACCAAATAATGTCCATTCACCTC CTTCAGCAGAATCTTCAGCATTGAAAAAGAAAGGCTCTCATTCTCCTCTTTTAGCAGAATCTTTAGCCATGAGAAAGAAAAGCTCTCATTCCTTTCCTTC AGCAGAATCTTTAGCCACGAGAAAGAAAGGCTTTGGCCGTCCAAGAAAAACTGGACAAGAAAGTACTACACAACGCTTTGAAAGTCTGCCTAAAGGAAGG AAGAGATCCCGGGTTAAGTGA
AA sequence Show only first row Show all	>Potri.004G036900.1 pacid=42795850 polypeptide=Potri.004G036900.1.p locus=Potri.004G036900 ID=Potri.004G036900.1.v4.1 annot-version=v4.1 MGTEILINKWGTWEELLLGGAVIRHGTRDWNLVASELRARTVNCPYTFTPEICKAKYEDLQQRYSGCKAWFEELRKQRMAELRRALEQSEGSIGSLESKL EILKAERREDCHVSYDSSQTESPVLFRKCDGIESSSKETSKDGLSAGSFTQDTKTNWTPECRVATAMPAAEMEIKPEVSISPEENKVSSIWKLSESIFAG QVSSLKRRRGKRKRKDCSKDVKEGSVGESEFLGSADALFATRCKDNSTSTSGQIARCSTVDDQSRGSSKDGAVDVRVIFDSIAENKCASVFHRRLDSQKR GRYKKMILQHMDIDTIRSRIASGSITTAKEIFRDLLLLANNALVFYSKTTREYKSALLLRDIVTKSLQQNLKNYITKTTITFLSTTSPLLNPPVKPQCAR PGNGKLSGKVTKAGKLVAKTPNTGKRPNNVHSPPSAESSALKKKGSHSPLLAESLAMRKKSSHSFPSAESLATRKKGFGRPRKTGQESTTQRFESLPKGR KRSRVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61215		BRD4	bromodomain 4 (.1)		Potri.004G036900 [exp]	0	1
AT3G62010			unknown protein		Potri.014G109900 [exp]	2.64	0.8040
AT5G17680			disease resistance protein (TI...		Potri.017G010800 [exp]	11.00	0.7679
AT1G20670			DNA-binding bromodomain-contai...		Potri.004G206200 [exp]	12.64	0.7794
AT5G59790			Domain of unknown function (DU...		Potri.001G235700 [exp]	12.72	0.7823
AT2G16485			nucleic acid binding;zinc ion ...		Potri.005G117300 [exp]	16.79	0.7746
AT1G26580			unknown protein		Potri.004G118400 [exp]	20.00	0.7563
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Potri.003G092200 [exp]	21.42	0.7817	ATMYC2.1
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.005G186500 [exp]	23.91	0.7605	Pt-SCL1.1
AT2G27430			ARM repeat superfamily protein...		Potri.011G065300 [exp]	29.15	0.7652
AT4G19460			UDP-Glycosyltransferase superf...		Potri.003G105500 [exp]	33.80	0.7685

Compare expression of checked genes

Potri.004G036900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.