Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NSF.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04910 1195 / 0 NSF N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) AT3G53230 172 / 1e-44 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 171 / 3e-44 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT5G03340 168 / 2e-43 ATPase, AAA-type, CDC48 protein (.1) AT3G56690 156 / 3e-39 CIP111 Cam interacting protein 111 (.1) AT5G19990 144 / 3e-37 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 144 / 3e-37 RPT6A AAA-type ATPase family protein (.1) AT1G45000 143 / 8e-37 AAA-type ATPase family protein (.1.2) AT5G43010 142 / 2e-36 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G05910 146 / 6e-36 cell division cycle protein 48-related / CDC48-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052800 [exp] 1368 / 0 AT4G04910 1179 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) Potri.012G088200 [exp] 174 / 3e-45 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 172 / 8e-45 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 172 / 2e-44 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 171 / 2e-44 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 171 / 3e-44 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.008G144100 [exp] 144 / 4e-37 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.006G035000 [exp] 149 / 6e-37 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.005G025100 [exp] 142 / 2e-36 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011177 [exp] 1189 / 0 AT4G04910 1204 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) Lus10015440 [exp] 1184 / 0 AT4G04910 1200 / 0.0 N-ethylmaleimide sensitive factor, AAA-type ATPase family protein (.1) Lus10021442 [exp] 170 / 7e-44 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 169 / 9e-44 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 168 / 2e-43 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 167 / 5e-43 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 166 / 2e-42 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 158 / 3e-40 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 155 / 6e-40 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10025576 [exp] 152 / 8e-38 AT1G05910 1557 / 0.0 cell division cycle protein 48-related / CDC48-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0402 [poplar] [flax] Cdc48_2-like PF02933 [poplar] [flax] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.004G043900.1 pacid=42795170 polypeptide=Potri.004G043900.1.p locus=Potri.004G043900 ID=Potri.004G043900.1.v4.1 annot-version=v4.1 ATGGCGAGTCGGTTCGGTTTCCAATCAACGACAATGATCGTGACAAACACACCAGCGGCAGATCTCGCACTCACAAATCTCGCTTACTGCTCCCCCTCCG ATCTCCACAACTTCGCCGTCCCCGGAACCAAGCTCTTCTTAGCTTTAGTCGCTGACTCCTCCGTTCTCTCTTTTTCTCCTCATGAAAATATTCGTACCGG TCAAATTGCGCTTAATGCGATTCAGCGAAGGCATGCAAAGGTTTCATCTGGCGATACGGTTTCTGTGAGCAGGTTTATCCCTCCTGAAGATTTTAACCTT GCATTGTTAACACTTGAGTTGGAATTTGTGAAGAAGGGGACTAGGAATGAGCAGATTGATGCTGTTATTCTGGCCAACCAGCTTAGGAAGAGGTTTGCTA ACCAGGTTATGACATCTGGGCAAAGAGCAACATTTGAGTATCATGGAAACAATTACATATTTACAGTCACTCAAGCCACTGTGGAGGGACGGGAAGATTC TAATGATGTTGAGAGAGGAATGATTTCAAGTGATACATACATCGTCTTTGAAGCATCAAATTCAAGTGGCATTAAGATTGTCAATCAGCGTGAAGCTGCC AGTAGCAACATCTTTAGGCATAAGGAGTTTAATCTTCAGTCACTGGGTATAGGTGGTCTGGGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCT CTCGTGTTTTCCCACCTCACGTGACAAGCAAATTGGGGATCAAGCATGTAAAGGGAATGCTGCTTTATGGGCCTCCTGGCACTGGAAAAACTCTTATGGC TCGTCAAATTGGAAAAATGCTGAATGGGAGGGAGCCAAAGATTGTTAATGGACCTGAAGTCCTAAGCAAATTTGTTGGTGAGACTGAAAAGAATGTCAGA GACCTGTTTGCTGATGCTGAAAATGATCAAAGAACCAATGGGGACCAAAGTGATTTGCATGTAATAATCTTTGATGAAATTGATGCCATATGTAAGTCAA GAGGATCAACTAGAGATGGTACAGGAGTCCATGATAGCATTGTGAACCAGCTACTTACAAAGATAGATGGTGTGGAGTCCCTGAATAATGTTTTACTTAT CGGAATGACCAACAGAAAGGATTTGCTTGATGAAGCACTTTTGAGGCCAGGAAGATTGGAGGTTCAAGTTGAAATAAGCCTTCCTGATGAAAATGGTCGG CTGCAGATTCTTCAAATTCATACAAACAAGATGAAAGAGAATTCTTTTCTTGCTCCTGATGTAAATCTTCAAGAGCTTGCTGCTCGCACAAAAAATTACA GTGGAGCAGAACTTGAAGGTGTAGTGAAAAGTGCAGTATCATTCGCTTTGAATCGACAACTAAGTCTAGATGATCTTACCAAGCCAGTTGATGAAGAGAG TATTAAAGTTACGATGGATGACTTTTTGCATGCACTCCATGAAATTGTTCCGGCATTTGGAGCCTCCACTGATGACCTTGAACGATGCAGACTTAATGGC ATGGTGGACTGTGGTGATCGACACAAGCATATTTATCAGAGAGCTATGCTACTGGTGGAGCAAGTTAAAGTTAGCAAGGGAAGTCCAATGGTCACTTGCC TTCTGGAAGGCCCAAGTGGCAGTGGTAAAACTGCATTGGCAGCTACAGTTGGCATTGACAGTGATTTTCCATATGTCAAGATAATCTCAGCTGAAACAAT GATTGGTCTCCATGAGAGCACTAAATGTGCACAGATTGTTAAGGTGTTTGAGGATGCGTACAAGTCTCCTTTAAGCATTATAATTCTTGATGACATCGAG AGATTATTGGAGTATGTCGCTATTGGGCCTCGCTTTTCAAATATAATTTCTCAGACATTGATGGTGCTCCTGAAACGTCTTCCTCCCAAGGGAAAGAAAC TTCTGGTGTTAGGGACAACAAGTGAAGTAAGCTTCTTGGATTCAGTTGGTATTTGTGATGCTTTCTCTGTTACTTACCACCTTCCCACATTGAAGGCGGA TGATGCAAAGAAGGTACTGGAACAGCTCAATGTTTTCGCTGAAGATGATGTCAGTGCTGCTGCAGAAGCCCTGAATGATATGACTATCAAGAAGCTCTAT ATGTTGATTGAGATGGCAGCCCAGGGAGAGCAAGGTGGAGCTGCTGAGGCTATCTATTCCGGTAAAGAGAAGATCAAGATTGCACATTTTTACGATTGCC TTCAGGACATTGTGCGATTCTAA
AA sequence Show only first row Show all	>Potri.004G043900.1 pacid=42795170 polypeptide=Potri.004G043900.1.p locus=Potri.004G043900 ID=Potri.004G043900.1.v4.1 annot-version=v4.1 MASRFGFQSTTMIVTNTPAADLALTNLAYCSPSDLHNFAVPGTKLFLALVADSSVLSFSPHENIRTGQIALNAIQRRHAKVSSGDTVSVSRFIPPEDFNL ALLTLELEFVKKGTRNEQIDAVILANQLRKRFANQVMTSGQRATFEYHGNNYIFTVTQATVEGREDSNDVERGMISSDTYIVFEASNSSGIKIVNQREAA SSNIFRHKEFNLQSLGIGGLGAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGREPKIVNGPEVLSKFVGETEKNVR DLFADAENDQRTNGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGR LQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVDEESIKVTMDDFLHALHEIVPAFGASTDDLERCRLNG MVDCGDRHKHIYQRAMLLVEQVKVSKGSPMVTCLLEGPSGSGKTALAATVGIDSDFPYVKIISAETMIGLHESTKCAQIVKVFEDAYKSPLSIIILDDIE RLLEYVAIGPRFSNIISQTLMVLLKRLPPKGKKLLVLGTTSEVSFLDSVGICDAFSVTYHLPTLKADDAKKVLEQLNVFAEDDVSAAAEALNDMTIKKLY MLIEMAAQGEQGGAAEAIYSGKEKIKIAHFYDCLQDIVRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.004G043900 [exp]	0	1	NSF.1
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144241 [exp]	2.82	0.9383
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	4.00	0.9175
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Potri.002G071600 [exp]	5.65	0.9065	Pt-VPS45.2
AT1G76550			Phosphofructokinase family pro...		Potri.005G257800 [exp]	6.16	0.9341
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.002G021800 [exp]	6.48	0.9071
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	9.32	0.9242
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.016G033200 [exp]	9.53	0.8919
AT1G06470			Nucleotide/sugar transporter f...		Potri.006G278700 [exp]	11.83	0.9069
AT2G20840			Secretory carrier membrane pro...		Potri.013G144700 [exp]	12.04	0.9133
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.001G108700 [exp]	15.29	0.9050

Compare expression of checked genes

Potri.004G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.