Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28360 158 / 2e-49 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT5G44210 111 / 7e-31 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT3G15210 110 / 2e-30 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28370 105 / 4e-29 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G50640 106 / 7e-29 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT3G20310 101 / 8e-27 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT1G24590 100 / 6e-26 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT1G12980 101 / 7e-26 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G03800 99 / 1e-25 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT2G33710 98 / 1e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056900 [exp] 284 / 2e-99 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.004G047600 [exp] 113 / 3e-31 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.017G013700 [exp] 108 / 7e-30 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.002G043300 [exp] 107 / 2e-29 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.005G219600 [exp] 107 / 2e-29 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.007G138100 [exp] 105 / 1e-28 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G163700 [exp] 101 / 1e-25 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.001G067600 [exp] 97 / 4e-25 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.010G046600 [exp] 100 / 5e-25 AT1G24590 71 / 2e-13 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033664 [exp] 112 / 2e-31 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10039857 [exp] 107 / 3e-29 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10031526 [exp] 102 / 4e-27 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10035076 [exp] 101 / 4e-26 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10014345 [exp] 98 / 3e-25 AT1G12980 97 / 1e-24 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) Lus10035129 [exp] 96 / 2e-24 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10016827 [exp] 96 / 5e-24 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10037448 [exp] 96 / 1e-23 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10026053 [exp] 94 / 1e-23 AT5G18560 97 / 7e-24 Integrase-type DNA-binding superfamily protein (.1) Lus10018623 [exp] 92 / 1e-23 AT3G15210 104 / 9e-29 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.004G047500.1 pacid=42794390 polypeptide=Potri.004G047500.1.p locus=Potri.004G047500 ID=Potri.004G047500.1.v4.1 annot-version=v4.1 ATGGCTTCTTCAAGGGAAGGACACTACAGGGGAGTTCGAAAGAGACCATGGGGTCGCTATGCTGCAGAAATACGTGACCCATGGAAGAAAACACGGGTAT GGCTAGGCACATTTGATACACCTGAAGAAGCTGCTCTCGCTTATGATGGTGCAGCTCGTTCTCTTCGTGGAGCTAAGGCAAAGACTAACTTCCCATCACC ACCTTCCACTTCTGGTCTCTCTCTGGACCTTAATCTTCCATCCGACCCTCACCACCACCACCTTCGTTGGGGTTCAAGTCCTCATGTCGGGTCCCACAGG TTTGGTGGTCTTGGTGAGTTCTTGCAGACTGGAGTGGTTTTTAAAGAAATGAACTTCAATGCTACTGAGGCTGCAGCAGCTTCTGGGCCAGTAGTGAAAA TAGAGGGTCCTGGTGTTGGTGCTGTAGCTGGAGCTCCGGTGCCGGAAAATGTTGCTCCGGCTTCGTTTTTGGGGATGGTGCGACGTGGGTTGCCAATAGA TTTGAACGAGCCTCCACCTTTGTGGCTGTGA
AA sequence Show only first row Show all	>Potri.004G047500.1 pacid=42794390 polypeptide=Potri.004G047500.1.p locus=Potri.004G047500 ID=Potri.004G047500.1.v4.1 annot-version=v4.1 MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPSPPSTSGLSLDLNLPSDPHHHHLRWGSSPHVGSHR FGGLGEFLQTGVVFKEMNFNATEAAAASGPVVKIEGPGVGAVAGAPVPENVAPASFLGMVRRGLPIDLNEPPPLWL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Potri.004G047500 [exp]	0	1
AT1G52140			unknown protein		Potri.001G188900 [exp]	5.65	0.9283
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.002G126700 [exp]	5.91	0.8957
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025900 [exp]	6.00	0.9348
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.001G025200 [exp]	6.24	0.9279
AT3G60390	HD	HAT3	homeobox-leucine zipper protei...		Potri.002G136400 [exp]	7.00	0.9124	Pt-ATHB.8
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.002G134500 [exp]	7.74	0.9251	CYP721.5
					Potri.009G114701 [exp]	10.95	0.9108
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.010G122400 [exp]	11.83	0.9082
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.008G184400 [exp]	13.41	0.8891	CYP71B40-1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.016G099200 [exp]	13.78	0.9230

Compare expression of checked genes

Potri.004G047500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.