Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44210 99 / 3e-25 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT1G28370 91 / 1e-22 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT3G15210 89 / 3e-21 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28360 85 / 3e-20 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G03800 84 / 1e-19 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT1G53170 82 / 5e-19 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT1G50640 81 / 2e-18 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT3G20310 79 / 9e-18 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT5G61890 78 / 4e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G13330 77 / 6e-17 AP2_ERF RAP2.6L related to AP2 6l (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057000 [exp] 260 / 5e-88 AT5G44210 94 / 1e-23 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.017G013700 [exp] 92 / 7e-23 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G397200 [exp] 92 / 2e-22 AT3G15210 95 / 1e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.007G138100 [exp] 91 / 2e-22 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.004G047500 [exp] 84 / 4e-20 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.011G056900 [exp] 84 / 4e-20 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.011G115600 [exp] 82 / 8e-19 AT3G15210 92 / 7e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.001G356100 [exp] 78 / 2e-17 AT1G50640 108 / 7e-29 ethylene responsive element binding factor 3 (.1) Potri.001G067600 [exp] 78 / 3e-17 AT5G13330 130 / 1e-37 related to AP2 6l (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015415 [exp] 147 / 1e-43 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10039857 [exp] 87 / 1e-20 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 86 / 1e-20 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10035329 [exp] 84 / 8e-19 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10029987 [exp] 79 / 2e-18 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10031526 [exp] 80 / 8e-18 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10043182 [exp] 77 / 6e-17 AT3G20310 111 / 6e-30 ethylene response factor 7 (.1) Lus10014054 [exp] 76 / 3e-16 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10022426 [exp] 75 / 8e-16 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10035076 [exp] 74 / 3e-15 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.004G047600.2 pacid=42795536 polypeptide=Potri.004G047632.1.p locus=Potri.004G047600 ID=Potri.004G047600.2.v4.1 annot-version=v4.1 ATGGCGCCTAGAGAGAAGACGGCCGCCGTTAAAGCTAGCGGAGGCGGAATTGTTGGTGGTGGTGGAGGAGGCAAGGAAGTGCATTTTAGAGGAGTGAGAA AGAGGCCGTGGGGAAGGTACGCTGCCGAGATAAGAGACCCGAGTAAGAAGAGCCGGGTTTGGCTTGGCACTTTCGACACGGCGGAGGAAGCTGCACGTGC CTACGATACTGCCGCACGTGAGTTCCGTGGCTCTAAGGCAAAGACTAACTTTCCATATCCATCATGCGAGAACGTTAAGAAAAACGTTCTCTCTATCGAC AGCAACAAGAAAGCTGCCAGCAAGAATAACAGTGGTGGTGGTGGTGGTAATAATCAGAGTCCCAGTCAAAGTAGTACCGTGGAGTTTTGTAGCAGTGATG CACCGTTGGATCTTAATCTTGGTCCCGCTGTATCCACCGTTAGATTGCCGTTTCAGCCGATGGCGATGAATCAACAGCAGGTGGTTTATTTTGATGCATT TATGAAGAGTCAATACCGAAGGATGGTTTTCGATCATGGGTATCATCATCATCCTAACCAGCCGGTGATTTTTTCTTGCGGTGGGGTCTTGAGTGATTCT GATTCATCCTCTGTCGTTGATTTGAATCATCAAGATGTCAAGACTCCGAGAAGATCTGTTGATCTTGATCTTAACCTTCCTCCCCCACCGGAGATTGCAT GA
AA sequence Show only first row Show all	>Potri.004G047600.2 pacid=42795536 polypeptide=Potri.004G047632.1.p locus=Potri.004G047600 ID=Potri.004G047600.2.v4.1 annot-version=v4.1 MAPREKTAAVKASGGGIVGGGGGGKEVHFRGVRKRPWGRYAAEIRDPSKKSRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPYPSCENVKKNVLSID SNKKAASKNNSGGGGGNNQSPSQSSTVEFCSSDAPLDLNLGPAVSTVRLPFQPMAMNQQQVVYFDAFMKSQYRRMVFDHGYHHHPNQPVIFSCGGVLSDS DSSSVVDLNHQDVKTPRRSVDLDLNLPPPPEIA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.004G047600 [exp]	0	1
AT5G37490			ARM repeat superfamily protein...		Potri.017G135000 [exp]	2.00	0.9178
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.011G057000 [exp]	3.00	0.9100
AT3G57450			unknown protein		Potri.016G055901 [exp]	7.07	0.8431
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.008G090400 [exp]	9.38	0.8617
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.001G286400 [exp]	18.16	0.7454
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.001G295500 [exp]	23.49	0.8405
AT1G32928			unknown protein		Potri.001G449800 [exp]	31.98	0.7972
AT3G03280			unknown protein		Potri.006G105600 [exp]	33.04	0.7999
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.009G034800 [exp]	34.85	0.7996
AT3G03280			unknown protein		Potri.006G105500 [exp]	38.07	0.8001

Compare expression of checked genes

Potri.004G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.