Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18450 127 / 6e-35 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 90 / 3e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61590 86 / 5e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17490 87 / 6e-20 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G47230 86 / 3e-19 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G07580 85 / 3e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47220 84 / 5e-19 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT5G61600 84 / 6e-19 AP2_ERF ERF104 ethylene response factor 104 (.1) AT4G17500 84 / 7e-19 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT3G23220 77 / 2e-17 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G061800 [exp] 352 / 9e-123 AT4G18450 134 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051700 [exp] 100 / 2e-25 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.011G061700 [exp] 94 / 2e-23 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.003G150800 [exp] 95 / 1e-22 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 94 / 3e-22 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G080600 [exp] 90 / 2e-20 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.001G079600 [exp] 87 / 3e-20 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 86 / 1e-19 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.001G154200 [exp] 86 / 2e-19 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005281 [exp] 127 / 2e-35 AT4G18450 118 / 1e-31 Integrase-type DNA-binding superfamily protein (.1) Lus10013958 [exp] 120 / 2e-32 AT4G18450 116 / 8e-31 Integrase-type DNA-binding superfamily protein (.1) Lus10025430 [exp] 90 / 5e-22 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1) Lus10013959 [exp] 89 / 7e-22 AT3G23240 124 / 2e-36 ethylene response factor 1 (.1) Lus10032499 [exp] 90 / 5e-21 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 89 / 8e-21 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10005285 [exp] 83 / 2e-19 AT3G23240 120 / 1e-34 ethylene response factor 1 (.1) Lus10014655 [exp] 84 / 5e-19 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10006579 [exp] 83 / 1e-18 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10004368 [exp] 84 / 2e-18 AT4G17500 268 / 7e-90 ethylene responsive element binding factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.004G051800.1 pacid=42795293 polypeptide=Potri.004G051800.1.p locus=Potri.004G051800 ID=Potri.004G051800.1.v4.1 annot-version=v4.1 ATGACTATACAAAGTGATCATCGTGCAGCATCTGAAGGAATCTTAGAGAATGTTTGGGCAAGCTACATAGGAGAAGATAGAGGAGACATAGGGATTAGTA ATAGTGAACAAGAGGTGTCTAAATCATGGCAGGATTTGCCTAGTCTTGATAGGAGAGATGAGTCGATGGAGGCTCTACAAAGGCTACCGAGTCTAGGCAG GTGGATCTCGATGGGTGCTGAGACCTGGGAGGAACTTCTTGATGGAATCATTCCTGAAATTAACGATACTTGCAATGATAGTGCAGAAAACAAAGGCCCC AGCAGCCTAAGCTCCAAAGCGAGTGCTGTGAAAGTAGAGAAAGTGACCACCAGGCATTACCGGGGAGTAAGGAGGCGGCCTTGGGGAAAGTATGCAGCAG AGATAAGGGACTCGTCGAGAAAAGGAGCTCGAGTTTGGCTTGGGACTTTTGAGACAGCTGAAGAAGCAGCTTTGGCTTACGACAAGGCTGCTTTGAGAAT CAGAGGCCCCAAGACATACCTCAACTTCCCACTTGAAACAGTTGCTAAGGCTATGTGCATTGACTGCTCCAAAAACGACTCCAATGTTTTGTCCACCACA AATTCTCAAGGGAACAACACTTCTTGCACATTTCCGGGAAGCAGTGACAAAGTTTCAGTTATCCATAGAAAAAGGGCTTCAAGAGATTGGGAAGTGAAAA GTGAGTCGACAATGATGGAACAACCTGGACTCAAGAGAACGGCTCGCGTAGAAGAATTGTATGCGAATGATGTGGTAGAATTTCAGGACCTGGGGAGTGA CTACCTGGACAGTTTGCTGTCCTCTTTCTAG
AA sequence Show only first row Show all	>Potri.004G051800.1 pacid=42795293 polypeptide=Potri.004G051800.1.p locus=Potri.004G051800 ID=Potri.004G051800.1.v4.1 annot-version=v4.1 MTIQSDHRAASEGILENVWASYIGEDRGDIGISNSEQEVSKSWQDLPSLDRRDESMEALQRLPSLGRWISMGAETWEELLDGIIPEINDTCNDSAENKGP SSLSSKASAVKVEKVTTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFETAEEAALAYDKAALRIRGPKTYLNFPLETVAKAMCIDCSKNDSNVLSTT NSQGNNTSCTFPGSSDKVSVIHRKRASRDWEVKSESTMMEQPGLKRTARVEELYANDVVEFQDLGSDYLDSLLSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.004G051800 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412000 [exp]	12.00	0.7690
AT4G17900			PLATZ transcription factor fam...		Potri.001G141500 [exp]	12.64	0.7525
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.012G097000 [exp]	17.66	0.7284
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G308600 [exp]	20.85	0.7509
AT3G14460			LRR and NB-ARC domains-contain...		Potri.017G121901 [exp]	22.69	0.7436
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.008G136500 [exp]	23.49	0.7451
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003832 [exp]	23.81	0.7392
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Potri.009G107500 [exp]	24.00	0.7289
AT3G14470			NB-ARC domain-containing disea...		Potri.017G140132 [exp]	26.49	0.7420
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.002G129300 [exp]	30.00	0.6833	ADR1.1

Compare expression of checked genes

Potri.004G051800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.