Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52660 299 / 1e-100 MYB Homeodomain-like superfamily protein (.1.2) AT4G01280 231 / 2e-74 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 213 / 1e-67 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT5G02840 191 / 4e-59 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT3G09600 189 / 2e-58 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT1G18330 96 / 3e-22 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT5G37260 94 / 3e-22 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT3G10113 95 / 6e-22 MYB Homeodomain-like superfamily protein (.1) AT5G17300 95 / 6e-22 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT1G01060 95 / 2e-21 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146800 [exp] 448 / 1e-159 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 310 / 1e-104 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 298 / 4e-100 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 226 / 3e-72 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 199 / 1e-61 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.015G030400 [exp] 97 / 2e-22 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.012G038300 [exp] 96 / 5e-22 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.014G106800 [exp] 95 / 2e-21 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.004G074300 [exp] 94 / 3e-21 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027521 [exp] 322 / 2e-110 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 309 / 7e-104 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10038846 [exp] 276 / 2e-90 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 263 / 2e-86 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 254 / 4e-83 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10019902 [exp] 180 / 9e-54 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014015 [exp] 168 / 2e-48 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10014966 [exp] 129 / 4e-35 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10031322 [exp] 96 / 4e-22 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 95 / 1e-21 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G073300.2 pacid=42795852 polypeptide=Potri.004G073300.2.p locus=Potri.004G073300 ID=Potri.004G073300.2.v4.1 annot-version=v4.1 ATGGTATCAAAAAACCCGAACCCGGCTGACGGATCTTATCTGGATCCAACTGGAATGGCAGCATTACCTGGACTCTCACCTTTCCCTACAACAACAACGC CGCCAACAACCACAACGACGTCTTCTTCTACATCGGAGGATCCGAATAAGAAGATCCGGAAACCTTACACGATTACCAAATCCAGAGAGAGTTGGAGCGA ACCGGAACATGACAAATTTCTCGAAGCTCTTCAGCTGTTTGATAGAGATTGGAAAAAGATTGGAGCTTTTATTGGCTCAAAGACTATTATTCAGATACGA AGTCATGCACAGAAGTACTTTTTAAAGGTTCAAAAGAGCGGAACAAATGAACATTTGCCTCCACCACGGCCTAAAAGGAAGGCTGCTCATCCATATCCTC AAAAAGCATCAAAAAATGCCATAGTGCTTTCACAACCATCTGAGGCTTTTCAATCATCGTCTGCTCCCCTTGAACCTGGATATGTCTTGAGGCCTGATTC GTCTTCAATACCTATGAACCCCATTGCTAGTGCTGCTGTTGCTTCTTCTTGGACAAACAATGTGCCAACTGTTAGTTTATCAAACCAAACAAAAGGACCA GTAGCGGCTAATAATTGTTGCAGCAGCACTGAGAGTACTCCAAGAACAAAACCAATTGGGAAAACAGCTGAGCAAGGGAATCATGGTCATTCAATGAGAG TTCTGCCAGACTTTTCTCAGGTATATGGCTTCATCGGCAGTGTCTTCGATCCGAATGTTACTGATCAATTGCAGAATCTTAAGAAAATGGACCCTATAGA TGTCGAAACGGTGCTATTGCTGATGAGAAACCTCTCACTCAATCTTACCAGCCCAAGTTTTGAGGAACATAGAACCTTGCTCTCTTCCCACGAGATCGAC TCAGAAACCATTGGTGCGAACAATAATGCTGACCAATCAATGAATGTTGCTTAA
AA sequence Show only first row Show all	>Potri.004G073300.2 pacid=42795852 polypeptide=Potri.004G073300.2.p locus=Potri.004G073300 ID=Potri.004G073300.2.v4.1 annot-version=v4.1 MVSKNPNPADGSYLDPTGMAALPGLSPFPTTTTPPTTTTTSSSTSEDPNKKIRKPYTITKSRESWSEPEHDKFLEALQLFDRDWKKIGAFIGSKTIIQIR SHAQKYFLKVQKSGTNEHLPPPRPKRKAAHPYPQKASKNAIVLSQPSEAFQSSSAPLEPGYVLRPDSSSIPMNPIASAAVASSWTNNVPTVSLSNQTKGP VAANNCCSSTESTPRTKPIGKTAEQGNHGHSMRVLPDFSQVYGFIGSVFDPNVTDQLQNLKKMDPIDVETVLLLMRNLSLNLTSPSFEEHRTLLSSHEID SETIGANNNADQSMNVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.004G073300 [exp]	0	1
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Potri.010G087600 [exp]	6.00	0.9180
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Potri.011G116200 [exp]	6.24	0.9050
AT1G24040			Acyl-CoA N-acyltransferases (N...		Potri.010G095800 [exp]	6.63	0.8906
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.015G002300 [exp]	10.09	0.8838	APRR5.3,PtpRR3
AT4G10790			UBX domain-containing protein ...		Potri.001G085600 [exp]	11.18	0.9001
AT2G43235			unknown protein		Potri.007G124600 [exp]	12.08	0.9143
AT1G68140			Protein of unknown function (D...		Potri.001G208800 [exp]	13.07	0.8930
AT1G07470			Transcription factor IIA, alph...		Potri.001G244204 [exp]	18.70	0.8536
AT5G20700			Protein of unknown function (D...		Potri.006G139200 [exp]	19.07	0.8965
AT1G07310			Calcium-dependent lipid-bindin...		Potri.009G043300 [exp]	23.21	0.8586

Compare expression of checked genes

Potri.004G073300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.