Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 143 / 5e-35 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 124 / 4e-29 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G46530 99 / 2e-21 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G50950 99 / 4e-21 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 92 / 4e-19 NB-ARC domain-containing disease resistance protein (.1) AT3G46730 90 / 3e-18 NB-ARC domain-containing disease resistance protein (.1) AT1G69550 86 / 4e-17 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G58390 81 / 2e-15 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 79 / 7e-15 NB-ARC domain-containing disease resistance protein (.1) AT5G48620 76 / 7e-14 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140132 [exp] 427 / 7e-139 AT3G14470 292 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143700 [exp] 418 / 5e-135 AT3G14470 286 / 2e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.018G017900 [exp] 416 / 2e-134 AT3G14470 299 / 3e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143820 [exp] 411 / 1e-132 AT3G14470 316 / 3e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143433 [exp] 384 / 1e-121 AT3G14470 321 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.017G144481 [exp] 179 / 7e-53 AT3G14470 67 / 2e-13 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 184 / 2e-48 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 179 / 8e-47 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 175 / 2e-45 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 179 / 9e-47 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 161 / 9e-43 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 156 / 3e-39 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 153 / 3e-38 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 144 / 3e-37 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 143 / 4e-35 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 141 / 3e-34 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 139 / 7e-34 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 139 / 1e-33 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 136 / 8e-33 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.004G076700.2 pacid=42796404 polypeptide=Potri.004G076700.2.p locus=Potri.004G076700 ID=Potri.004G076700.2.v4.1 annot-version=v4.1 ATGGAAGAATTTGCTGCGAAATCCCTTTTAGGGAAGTTAGGCTCTTCTGCAATTAAAGAACTTTATCTGGCATGGGGACTTAAAGCTGAACTTGCAAGTC TTGAAGAGAAATTGTTAGCCATCAATGCAGTTTTGATGGATGCCGAGAAGAAACAGTCCCGGAATGAGAAGATTCGGTTCTGGCTTCAGATGCTCCGAGA ATTCATGTATGATGCAGAGGACGCACTGGATGGATTTGAGTGTGAAGATTTGAGAAGGCAAGTGGTGAAAACTACAGGGAGCACTAGCAGAAAGCTAAGC CGCTTCTTTTCAAGTTCTAACAAGCTTGCATTGCGTTTTAAAATGGGTCATAAAATAAAGGACCTCAACGACAGGCTAGCCGAGATTGAATCTCTGAAGT CTCTGCTTGGCCTCACCGAGCAGACTAGTGATCATAGTTCTAGCTTTTCCGGTCTTATTGGAAGAGACAGAGACAAGGAATGCACCATCAACCTCTTAGT AGAACCTTTAAAGGTTGATGACGCTCATCCCTTTGTCATTCCAATAGTCGGAATGGCTGGTTTGGGGAAGACTGCTCTTGCCAAATCGGTGTATGACGAT GGAAGTGTGGATGCCTTTTTTGAGCTGAAGATGCAGGCATGTGTTTCAGATGGATTTGCTCTCAAACAAGTGATGCAAAAGATGATCAACTCTGCAACTG GGGAAAGATGTAACGACTTGGAAGAGGTTGAACTAAAAGCAAAACTAGAAATGAAGTGTCTCTTGCTGAAGCCTATATTATCAAAAGGTGCACTTGGAAG TAAGATCATAGTAACCACCAGAAGTAAACGTGTAGCACAGATTATGGGTTCTGCTGGTGCACAAGAGTTAAGTCTTCTTGATCAAAAGGATTGTCTGACT TTGTTTTACAAGTGTGCATTTAAGGAAAGGCAGAAGGAGCAACATCCAAATTTGGTAGAAATTGGGAAAGAAATAGTGGGAAAATGCAAGCAAATTCCTC TGGCAGTAATCAACTTGGAACTCAATTTTATGTTCACGGATCCGTATTGGTGCAGTTTTGGATGGCACAAGGACTGGTTCATCAATCAACACATCCAAGT GAAAACTTGGAAGATGTTGGGATTCGCTATGTGCTGCATGATCTTGCATCATCATTGGTTCAAAATGAATGTTCAATCCTACGCTCAAATAACCACCAAG TTTTCAAAACTGCCAAACATTTATCAGTTGTTGACTCTTAACTCTTTTTTCCAAGCTCTTCCTAAGTTCCCAAATAAGATAGAGCGTGTGAGAACGCTTG TTTTTGTAGCCAGTCTAGAGGAACCTAGTTGCAGAACAGACTTCGAGAAATGTTTGTCAGGATTTAAGCATTTGCGGTCGCTGGAACTAATGGATGTCTG TGAATTTCTGCCGGATAAGATTGGCTCCCTGAAAGAGTTGAGATATCTGAATTTAGTTGAGAATACAAAGCTGAAAAGATTCCCAAAATCTATTTTCAAG TTACAAAATTTGCAGGCTCTGATTCTAGGTGATGGATTCGTAGAGCTGCCAAAAGATGTGAGGTGCTTGATCAGCCTTAGATTGTTATTTCTAATCACCA AGCAGAAGCGGTTGCCAGAAGGTGGAGTTGGGTGCTTGGGGAGTCTTCAAATTTTATTGATTGCTGGCTGTGAAAATCCTGAATATTTGTGTGAAGATAT GCAAGGTCTTAAAAGTCTTCGGAAATTGTGCATTGGAGGGTGTAAAAACTTGATCTCTTTGCCACGAAGTATGAAATACCTAACTGCACTTGAGTATTTG AGTATTATGGTATGTGAAAAGCTTGATCTGATGACAATAGAAACTCTATGTTTTATAACATTACCAGCAACGCGACCATTACCAAAACAGTTTCTTCAAG GATCTGCAGGCTCCTTACAAACATTTGCAATCGAAGACTGTCCAAACATCATAGAATTGCCAGAGTGCACCGGCAATCTGAAGGAACTTCAAAAGCTTGT GATCAGGATGTGTCCAAGTCTGGGCGAAAGGTGCCAAAGGGAAACAGGAGAAGATTGGCCCAAGATTGCTCATGTCCCTCATATTGATGTTGACTAT
AA sequence Show only first row Show all	>Potri.004G076700.2 pacid=42796404 polypeptide=Potri.004G076700.2.p locus=Potri.004G076700 ID=Potri.004G076700.2.v4.1 annot-version=v4.1 MEEFAAKSLLGKLGSSAIKELYLAWGLKAELASLEEKLLAINAVLMDAEKKQSRNEKIRFWLQMLREFMYDAEDALDGFECEDLRRQVVKTTGSTSRKLS RFFSSSNKLALRFKMGHKIKDLNDRLAEIESLKSLLGLTEQTSDHSSSFSGLIGRDRDKECTINLLVEPLKVDDAHPFVIPIVGMAGLGKTALAKSVYDD GSVDAFFELKMQACVSDGFALKQVMQKMINSATGERCNDLEEVELKAKLEMKCLLLKPILSKGALGSKIIVTTRSKRVAQIMGSAGAQELSLLDQKDCLT LFYKCAFKERQKEQHPNLVEIGKEIVGKCKQIPLAVINLELNFMFTDPYWCSFGWHKDWFINQHIQVKTWKMLGFAMCCMILHHHWFKMNVQSYAQITTK FSKLPNIYQLLTLNSFFQALPKFPNKIERVRTLVFVASLEEPSCRTDFEKCLSGFKHLRSLELMDVCEFLPDKIGSLKELRYLNLVENTKLKRFPKSIFK LQNLQALILGDGFVELPKDVRCLISLRLLFLITKQKRLPEGGVGCLGSLQILLIAGCENPEYLCEDMQGLKSLRKLCIGGCKNLISLPRSMKYLTALEYL SIMVCEKLDLMTIETLCFITLPATRPLPKQFLQGSAGSLQTFAIEDCPNIIELPECTGNLKELQKLVIRMCPSLGERCQRETGEDWPKIAHVPHIDVDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.004G076700 [exp]	0	1
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Potri.007G123400 [exp]	3.16	0.7619
AT3G18670			Ankyrin repeat family protein ...		Potri.011G019200 [exp]	3.16	0.8062
AT3G50140			Plant protein of unknown funct...		Potri.010G144200 [exp]	4.58	0.7503
AT1G32260			unknown protein		Potri.001G138200 [exp]	19.74	0.7262
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Potri.019G040700 [exp]	26.15	0.6669
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012700 [exp]	32.40	0.6616
					Potri.009G054450 [exp]	32.55	0.7314
AT5G59970			Histone superfamily protein (....		Potri.005G115601 [exp]	35.41	0.7257
					Potri.001G302201 [exp]	38.52	0.7255
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.017G059200 [exp]	47.49	0.6564

Compare expression of checked genes

Potri.004G076700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.