Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52510 483 / 3e-163 GRAS SCL8 SCARECROW-like 8 (.1) AT1G21450 275 / 9e-84 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 249 / 8e-75 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 236 / 4e-71 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 229 / 1e-66 GRAS SCL5 scarecrow-like 5 (.1) AT4G17230 210 / 5e-60 GRAS SCL13 SCARECROW-like 13 (.1) AT5G17490 170 / 1e-45 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 168 / 5e-45 GRAS RGL1 RGA-like 1 (.1) AT2G29065 163 / 2e-42 GRAS family transcription factor (.1) AT3G03450 160 / 5e-42 GRAS RGL2 RGA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142400 [exp] 843 / 0 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1) Potri.002G073400 [exp] 270 / 7e-82 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G186500 [exp] 264 / 2e-79 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 244 / 2e-72 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 242 / 7e-72 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G409500 [exp] 239 / 4e-70 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 230 / 5e-67 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.016G009700 [exp] 206 / 3e-58 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 201 / 1e-56 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039265 [exp] 517 / 6e-176 AT5G52510 503 / 1e-170 SCARECROW-like 8 (.1) Lus10027505 [exp] 474 / 5e-161 AT5G52510 443 / 2e-149 SCARECROW-like 8 (.1) Lus10042776 [exp] 258 / 3e-77 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 256 / 7e-77 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10016596 [exp] 250 / 1e-74 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 236 / 3e-69 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 234 / 8e-69 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 229 / 3e-67 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 227 / 2e-66 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 213 / 7e-64 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.004G078800.1 pacid=42794594 polypeptide=Potri.004G078800.1.p locus=Potri.004G078800 ID=Potri.004G078800.1.v4.1 annot-version=v4.1 ATGGCCTCTGGGTTTTCAGGCGGTGGCGGTGGCGGTGGCGGTGGCGTCCAAGATTTCTACACCAATAGATCACCTATTATACCCACCATGAACCTAACAA ATAACCACCACAACCCATCATCACTGCCTCCTTATAGAACCAACCAAATTTTTCTTGACCAAAATTTGTCTTCTCATAATTACCAACAGATCGCTCAACA TAGAGCAATCTTTCCCACAACCACCGCTACCACCACCTTGATCGGCAAGCGAACACTTGCCGATTTTCAAGCATTTCAACAATCACCACCGCAACAAAAC CTGTTAAACCAAGCAGCACTGAACAATCTTCTTCTCCGGTCTGTAAAGCCGAGGATTAATAACAATATTTTCCAACAGAACACGTCTCCGATTTCCACCC TTGATTTCTCTGTTAGCAACCTGTCTCCTGAGCTCCCTTCCTTAATGTCTCAACGTTACGGGCTCCCTCTTCTTCAACAGCTTCGACCCCAACACCACCA ACAACATCAGCAGCAGCAGCCCATGAATCTAATTAGTCCTATTGGTATCATCAACAACAACAGAAGCAGCAACAACAGCATGATGCCGTATGTGAATATG TTACAGAATCAAAACGGAGGAGGAAATGGAATAGTTATGGGCCAAGATCGGGAGAAAAAGATGCTGAACCAGCTTCAAGAACTGGAAAAACAGCTTCTTG ACGACGACGACGATAACCAAGAAGGTGATGCCGTCAGTGTTATAACGAACACTAACAGTGAATGGTCTGAAACAATACATAATCTCATCACTTCTTCTTC TTGTAATAATCCGATTTCTCCATCACCCACTTCATCATCTTCATCCTCATTTTCAACGGTCACAACTCCGGTTTCGAAACAGACAGTAATCGAAGCAGCA TCAGCAATTTACGAAGGTAAAACTGATGTTTACACTGAGATCTTGACTCGTGTGTCTCTGGTTTCGAGCCCAGGAGGGAATTCTGAGCAGAGATTGATTG AGTACATGTTGATGGCTTTAAAATCCCGGCTTAATTCTTCTGAAAACACAACTTCTGTAATGGAGCTGTATAGCAAGGAACATGTGGATGCAACCCAGTT GTTATACGACCTGTCTCCTTGTTTCAAACTTGGTTTCATGGCTGCCAATCTTGCCATCATTGACGCTACAAGAGAGCAAGAACAAGAGGCGAACACTTCC AGCAATGGCTTCCATGTTGTTGATTTTGATATTGGTCATGGAGGGCAATACAAGAACCTTCTACACGCGCTTTCTGGGCTTCAGAATTCGAAGCCAGCCA TTGTTAAGATCACAGCCGTTGCTGCTGATAGCAATGGCGTAGAGGAGGAGAGGCTGAGGCTAGTTGGTGAAACGCTTACCCAACTCGCTCGTCGAGTTGG TCTGAATTTGTGTTTCAACGTTGTGAGCTGCAAACTCAGTGAGTTGACTCGGGAGTCCCTCGGGTGCGAGCCGGACGAGGCATTGGCTGTCAATTTTGCG TTCAAGCTGTATAGAATGCCGGACGAGAGCGTGTCCTCCACCGAGAATCCCAGGGATGAGCTTTTGAGGCGCGTGAAGGGGCTGGCGCCGCGCGTGGTGA CTGTAGTGGAGCAAGAAATGAATACCAACACGGCCCCATTCATGGCGCGCGTGAACGAATCCTGTTCATATTACGGAGCGCTATTCGACTCGATTGAGTC AACGGTTAAAGGGGATAACTCGGAGCGAGCCAAGGTCGAGGAGGGACTGGGGCGGAGGATGGTAAACTCGGTTGCTTGTGAAGGGAGGGACCGTGTTGAA AGATGCGAGGTGTTTGGAAAATGGCGGGCCCGGATGGGCATGGCAGGGTTCGAGTTGAAGCCTCTGAGTCACAACATAGCCGAGTCGATGAAAACGAGAT TGAGTTTAGCAAACAGAGTTAACCCAGGATTTAGTGTTAAAGAAGAGAATGGTGGGGTATGTTTCGGTTGGATGGGAAAAACTCTCACAGTCGCATCTGC TTGGCGTTAA
AA sequence Show only first row Show all	>Potri.004G078800.1 pacid=42794594 polypeptide=Potri.004G078800.1.p locus=Potri.004G078800 ID=Potri.004G078800.1.v4.1 annot-version=v4.1 MASGFSGGGGGGGGGVQDFYTNRSPIIPTMNLTNNHHNPSSLPPYRTNQIFLDQNLSSHNYQQIAQHRAIFPTTTATTTLIGKRTLADFQAFQQSPPQQN LLNQAALNNLLLRSVKPRINNNIFQQNTSPISTLDFSVSNLSPELPSLMSQRYGLPLLQQLRPQHHQQHQQQQPMNLISPIGIINNNRSSNNSMMPYVNM LQNQNGGGNGIVMGQDREKKMLNQLQELEKQLLDDDDDNQEGDAVSVITNTNSEWSETIHNLITSSSCNNPISPSPTSSSSSSFSTVTTPVSKQTVIEAA SAIYEGKTDVYTEILTRVSLVSSPGGNSEQRLIEYMLMALKSRLNSSENTTSVMELYSKEHVDATQLLYDLSPCFKLGFMAANLAIIDATREQEQEANTS SNGFHVVDFDIGHGGQYKNLLHALSGLQNSKPAIVKITAVAADSNGVEEERLRLVGETLTQLARRVGLNLCFNVVSCKLSELTRESLGCEPDEALAVNFA FKLYRMPDESVSSTENPRDELLRRVKGLAPRVVTVVEQEMNTNTAPFMARVNESCSYYGALFDSIESTVKGDNSERAKVEEGLGRRMVNSVACEGRDRVE RCEVFGKWRARMGMAGFELKPLSHNIAESMKTRLSLANRVNPGFSVKEENGGVCFGWMGKTLTVASAWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.004G078800 [exp]	0	1
AT2G42880		ATMPK20	MAP kinase 20 (.1)		Potri.002G059900 [exp]	1.73	0.7982	Pt-ATMPK20.2
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	4.24	0.7160
AT3G62660		GATL7	galacturonosyltransferase-like...		Potri.002G200200 [exp]	4.47	0.7887
AT1G48790		AMSH1	associated molecule with the S...		Potri.015G045800 [exp]	7.87	0.6955
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.007G032700 [exp]	9.48	0.7347
AT3G20720			unknown protein		Potri.011G132800 [exp]	9.48	0.7349
AT1G52320			unknown protein		Potri.003G054800 [exp]	19.28	0.6672
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G198250 [exp]	25.69	0.7455
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.005G129500 [exp]	29.39	0.6710
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.019G008400 [exp]	33.22	0.7372

Compare expression of checked genes

Potri.004G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.