Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09460 228 / 3e-75 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT4G38620 223 / 8e-73 MYB AtMYB4 myb domain protein 4 (.1) AT1G22640 222 / 2e-72 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT2G16720 217 / 1e-70 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G34990 213 / 6e-69 MYB ATMYB32 myb domain protein 32 (.1) AT1G35515 207 / 2e-67 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT4G21440 208 / 5e-66 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 206 / 2e-65 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G15310 204 / 8e-65 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G02940 203 / 2e-64 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128900 [exp] 443 / 4e-160 AT4G09460 222 / 6e-73 myb domain protein 6 (.1) Potri.010G114000 [exp] 280 / 6e-96 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.008G128500 [exp] 253 / 3e-85 AT4G38620 217 / 1e-70 myb domain protein 4 (.1) Potri.015G041100 [exp] 225 / 6e-75 AT1G22640 212 / 2e-69 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.013G109300 [exp] 223 / 2e-72 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.019G081500 [exp] 222 / 3e-72 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.004G174400 [exp] 219 / 2e-71 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.005G112000 [exp] 216 / 3e-70 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.T011400 [exp] 217 / 7e-70 AT4G38620 257 / 5e-85 myb domain protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009448 [exp] 226 / 8e-74 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10001548 [exp] 225 / 2e-73 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10000411 [exp] 220 / 1e-71 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 219 / 2e-71 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10033473 [exp] 215 / 3e-70 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10014129 [exp] 219 / 2e-66 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10028435 [exp] 202 / 3e-65 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10041888 [exp] 202 / 3e-65 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10030378 [exp] 199 / 6e-63 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10041142 [exp] 199 / 1e-62 AT1G34670 315 / 2e-106 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G088100.1 pacid=42795248 polypeptide=Potri.004G088100.1.p locus=Potri.004G088100 ID=Potri.004G088100.1.v4.1 annot-version=v4.1 ATGAGAAAACCTTGCTGCGATAAACAAGGCAATAACAAAGGAGCATGGTCCACGCAAGAAGATCAGAAGCTCATTGATTATATTCAAACTCACGGTGAAG GTTGTTGGCGTTCTCTCCCTGAGGCCGCAGGTTTGCACCGCTGTGGCAAGAGTTGTAGGCTAAGATGGATAAACTATCTTAGGCCAGACATAAAACGTGG TAACTTTGGACAAGATGAAGAGGACCTCATTATTAAGCTACATGCTCTCCTTGGCAATAGGTGGGCATTGATAGCAGGAAGATTGCCAGGAAGAACTGAT AATGAGGTGAAGAACTATTGGAACTCTCATTTAAAGAAAAAGCTAATAAACATGGGAATTGACCCAAATAATCATCGGTTGAACCAAATTCTTCCTCGTC TTCAAGCTGAGCCTGCTGCTCCTGTTATTGCTATATCAACTACTACAGGGTCTAAGAATAATGTAGCTGCAAGCAAACCCAAGAATTTATCAAATGGTGA CAGTGATAGGGTTTCTGACACAGCAACTTGTCTCGAAGATGAATATGAATCTTTGGTGACACAGCAAGCTGCAACTTCTGGTTCTTCAAGCATTAATATT GATCTCAACATTGCAGCTCCAGCTTCTCCGGGTCACAGGACCACTTTTGGAAACAAGCAACAAAATTGCAAGTTGGGCAAAACTAGCCAAGTTGAGAGAG ACCCATCATCATTGCCAACTCTGCTTCTTTTTAGATGA
AA sequence Show only first row Show all	>Potri.004G088100.1 pacid=42795248 polypeptide=Potri.004G088100.1.p locus=Potri.004G088100 ID=Potri.004G088100.1.v4.1 annot-version=v4.1 MRKPCCDKQGNNKGAWSTQEDQKLIDYIQTHGEGCWRSLPEAAGLHRCGKSCRLRWINYLRPDIKRGNFGQDEEDLIIKLHALLGNRWALIAGRLPGRTD NEVKNYWNSHLKKKLINMGIDPNNHRLNQILPRLQAEPAAPVIAISTTTGSKNNVAASKPKNLSNGDSDRVSDTATCLEDEYESLVTQQAATSGSSSINI DLNIAAPASPGHRTTFGNKQQNCKLGKTSQVERDPSSLPTLLLFR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.004G088100 [exp]	0	1
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G098100 [exp]	2.00	0.9445
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G096300 [exp]	3.00	0.9425
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.012G144900 [exp]	3.46	0.9423
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G095700 [exp]	3.87	0.9417
AT3G03620			MATE efflux family protein (.1...		Potri.013G069250 [exp]	10.09	0.9439
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Potri.009G124800 [exp]	16.61	0.9409	GC1.1
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	24.39	0.9070	Pt-LACS2.2
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004100 [exp]	26.94	0.8978
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Potri.017G061600 [exp]	30.85	0.9104	FBL4,IPS1.1
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G118100 [exp]	31.43	0.9142

Compare expression of checked genes

Potri.004G088100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.