Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01570 708 / 0 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G03450 696 / 0 GRAS RGL2 RGA-like 2 (.1) AT1G14920 688 / 0 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 687 / 0 GRAS RGL1 RGA-like 1 (.1) AT5G17490 626 / 0 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G48150 245 / 3e-74 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 241 / 2e-71 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 227 / 5e-68 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50420 223 / 8e-66 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT3G54220 226 / 2e-65 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125200 [exp] 1126 / 0 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 773 / 0 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 772 / 0 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 299 / 2e-92 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.005G095100 [exp] 252 / 4e-76 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.014G164400 [exp] 249 / 5e-75 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.012G093900 [exp] 248 / 7e-75 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.015G091200 [exp] 247 / 1e-74 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.001G361700 [exp] 245 / 9e-74 AT1G50600 637 / 0.0 scarecrow-like 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017626 [exp] 829 / 0 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033583 [exp] 816 / 0 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10028511 [exp] 458 / 1e-155 AT5G17490 527 / 0.0 RGA-like protein 3 (.1) Lus10017758 [exp] 394 / 2e-130 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10009133 [exp] 327 / 1e-109 AT1G14920 286 / 3e-95 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 313 / 1e-97 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 312 / 2e-96 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10009134 [exp] 296 / 7e-95 AT2G01570 248 / 2e-95 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10022418 [exp] 245 / 1e-74 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10012323 [exp] 247 / 2e-74 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family CL0063 [poplar] [flax] PF12041 [poplar] [flax] DELLA Transcriptional regulator DELLA protein N terminal
Representative CDS sequence Show only first row Show all	>Potri.004G089800.3 pacid=42793964 polypeptide=Potri.004G089800.3.p locus=Potri.004G089800 ID=Potri.004G089800.3.v4.1 annot-version=v4.1 ATGAAGAGAGATCATCAAGAAACCATTGGTGGTGGTATTGGAAACAGAGCTGAATCTTCTTCTTCATCAATGGAAACTGGGAAAGGAAAATCATGGGTTG AAGATGATCAAGATGCGGGTGGCATGGATGAATTACTTGCTGTTTTGGGTTACAAAATTAAGTCTTCAGATATGGCTGATGTAGCTCAAAAGCTTGAACA ACTAGAGATGGTTTTGGGTTCTGAAGATGGAATTTCTCATCTTGCTTCTGATACTGTTCACTATAACCCTTCAGATCTCTCTGGTTGGGTTCAAAGTATG CTTTCTGAATTCAACAATCTACCTTCTACTGATCTTGATTCATCTATTCTTCTTTCCAATAATCGAGATTCACTCCTTGGACAACCTTCCACTATCACCC CCTTAGATTTCCCCAGTAATTCTCAATCTAAAGTATTCGCTGACGACTCTGAATATGATCTCAGAGCAATCCCTGGAGTTGCTGCCTATCCACAACAAGA ACTCGATAAGAGTAACGACAGGAAGCGAATGAAGCTCACTCCAATTGGGTCTAATATTGCGCCGGCACCATCTGTGAATTCCTTACAATCTCCCACTGCA TCTTCCACTTCTTCTTCATCTCCGCAAGCAATGGCAGTTTCAGGTACTTTGTCAGAGCCCACAAGACCTGTAGTCCTGGTTGACTCACAGGAAACTGGAG TCCGTCTTGTCCACACACTTTTGGCTTGTGCAGAGGCAATTCAGCAAGAAAATCTTAAACTTGCTGATGCCCTTGTTAAGCATATAGGACTACTTGCAGC ATCTCAAACTGGGGCTATGAGAAAAGTTGCAACTTACTTCGCTGAAGCTTTAGCTCGTCGAATTTACAAGATTTTCCCTCAAGATTACTGTCTCGATTCT TCATGTTCAGATACTTTAGAGATGCATTTCTACGAAACTTGCCCTTATCTCAAGTTCGCACATTTCACTGCCAATCAAGCCATTCTTGAAGCTTTCGCGA ATGCAAGTCGAGTCCACGTTATCGATTTTGGTTTAAAACAGGGAATGCAATGGCCGGCGTTAATGCAAGCTCTTGCATTAAGGCCTGGTGGTCCGCCAGC GTTTCGGTTGACGGGGATCGGGCCGCCGCAGCCTGATAACACAGATGCTTTGCAGCAAGTGGGGTGGAAGCTGGCACAATTGGCTCAAACTATTGGAGTA GAATTCGAGTTTCGCGGATTCGTAGCAAACTCTCTGGCGGATCTTGATGCGGAGATGCTTGGCCTCCTCCCTCCAGAGGTGGAGGCAGTGGCTGTTAACT CGGTTTTTGAGCTGCATCGCTTGTTGGGTCGGCCGGGTGGCATCGACAAGGTTCTCGAGTCTATCAAGGCCATGAGACCTAAAATTGTGACGATTGTTGA ACAAGAAGCAAACCACAACGGTCCGGTTTTTCTAGACCGGTTCACAGAGGCCTTACATTATTACTCGAGTTTGTTTGACTCTCTCGAAGGGTCCGGTTTG ACTCCACCGAGTCAGGACCTGGTTATGTCCGAGCTGTACTTAGGGAGGCATATTTGTAATGTGGTGGCATGCGAAGGGGCTGACCGAGTTGAGCGACACG AGACGTTGGCTCAGTGGAGAACTCGGTTTGATTCGGCTGGGTTTGACCCGGTTCATCTTGGGTCGAATGCCTTTAAACAAGCTAGTATGTTGTTGGCCCT CTTTGCCGGTGGTGACGGGTATAGGGTGGAGGAGAATAATGGCTGTCTCATGCTTGGGTGGCATACAAGGCCACTAATTGCCACCTCGGCGTGGCAGCTC GCCGCTGGTGATTCACAACAATGA
AA sequence Show only first row Show all	>Potri.004G089800.3 pacid=42793964 polypeptide=Potri.004G089800.3.p locus=Potri.004G089800 ID=Potri.004G089800.3.v4.1 annot-version=v4.1 MKRDHQETIGGGIGNRAESSSSSMETGKGKSWVEDDQDAGGMDELLAVLGYKIKSSDMADVAQKLEQLEMVLGSEDGISHLASDTVHYNPSDLSGWVQSM LSEFNNLPSTDLDSSILLSNNRDSLLGQPSTITPLDFPSNSQSKVFADDSEYDLRAIPGVAAYPQQELDKSNDRKRMKLTPIGSNIAPAPSVNSLQSPTA SSTSSSSPQAMAVSGTLSEPTRPVVLVDSQETGVRLVHTLLACAEAIQQENLKLADALVKHIGLLAASQTGAMRKVATYFAEALARRIYKIFPQDYCLDS SCSDTLEMHFYETCPYLKFAHFTANQAILEAFANASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGV EFEFRGFVANSLADLDAEMLGLLPPEVEAVAVNSVFELHRLLGRPGGIDKVLESIKAMRPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSGL TPPSQDLVMSELYLGRHICNVVACEGADRVERHETLAQWRTRFDSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQL AAGDSQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.004G089800 [exp]	0	1
AT3G52610			unknown protein		Potri.006G210900 [exp]	1.41	0.8144
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.015G048300 [exp]	9.69	0.7639
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Potri.010G034700 [exp]	30.57	0.7921
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.006G199500 [exp]	35.24	0.7462
AT5G20260			Exostosin family protein (.1)		Potri.006G064800 [exp]	50.28	0.7942
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.005G155300 [exp]	58.88	0.7577
AT5G20030			Plant Tudor-like RNA-binding p...		Potri.005G216200 [exp]	65.29	0.7670
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.007G132400 [exp]	66.74	0.7265
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.009G017400 [exp]	70.21	0.7728
AT1G15290			Tetratricopeptide repeat (TPR)...		Potri.003G031000 [exp]	89.48	0.7275

Compare expression of checked genes

Potri.004G089800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.