Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 441 / 2e-153 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 389 / 6e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 374 / 1e-126 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 338 / 5e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28610 297 / 2e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28520 294 / 3e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 291 / 4e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 274 / 8e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 273 / 3e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 230 / 5e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091500 [exp] 598 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 462 / 4e-162 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 458 / 2e-160 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 458 / 2e-160 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 409 / 2e-140 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 406 / 9e-140 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 404 / 5e-139 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 405 / 7e-139 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 397 / 2e-136 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015354 [exp] 462 / 8e-162 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 452 / 1e-157 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10032188 [exp] 429 / 7e-149 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 429 / 9e-149 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 390 / 8e-134 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 372 / 3e-126 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 363 / 2e-122 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005256 [exp] 351 / 5e-116 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 344 / 2e-115 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014497 [exp] 316 / 1e-104 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.004G091300.2 pacid=42794488 polypeptide=Potri.004G091300.2.p locus=Potri.004G091300 ID=Potri.004G091300.2.v4.1 annot-version=v4.1 ATGATGACTGGAGAAATATGGACTCAACTGAGCTCGGCCATTACTGGCCTAGTGCTTGCGTGGGTCATGTTTGAGCAATATTTTCCTTATCAACTTCGTG GCTATCTTCACAAATATAGTCAGAAGTTAATGAGCTATGCGTATCCTTACATCCAAGTTACCTTCCATGAATTCACAAGTGAACGTCTCAAGCGCAGCGA GGCCTTTTCTGCCATTCAGAGTTATCTCGGCTCCAATTCTACCAAGAATGCTAAGAGACTCAAGGCTGATGTTGTCAGAAACAACGAGCCCTTGGTCCTC ACCATGGACGATTACGAAGAAGTTACCGATGTTTTTGATGGGGTTAAGGTCTGGTGGTCTTCGAGTAAAACTGTCCCGAAAACACAATCTATTTCTTTTT ATCCTGCAGCCGATGAGAGGAGGCATTACAGGCTCACGTTCCACAAAAGTAATCGAGATGTCATCACCAAGAAATATATAGAACATGTTTTGAAAGAAGG GAAGTTGATTGCTGTGAAGAACCGGCAGAGAAAGCTCTTCACCAACAATCCTAGTGAGAATTGGTATGGGTGGAAATCTACCAAGTGGAGTCATGTGGTT TTTGAGCACCCCGCTACATTTGATACTCTGGCAATGGAAACAAAGAAGAAGGAAGAGATTAAGAAAGACCTTACCAAATTCAGTAAAGGAAAAGACTATT ATGCGAAGATCGGCAAGGCCTGGAAGCGTGGCTATCTCCTTTATGGCCCTCCAGGAACTGGCAAATCCACCATGATTTCTGCTATGGCTAATTTGTTGGA TTATGATATTTATGATCTTGAGTTGACCACAGTTAAGGACAACAGCGAGCTTAGGAAGCTATTGATCGAAACCACCGGAAAGTCTATCATTGTGATTGAG GATATTGATTGCTCACTTGATCTTACAGGACAGAGGAAGAAAACGAAGGAGAAAGATGATGACGACCAGTCAGACAAAGAGAAGGATCCAGTTTCTAAGA AAAAAAGGAGGCTGAAGAAGAAAGAAAAAGCGGCAGCAAGGTTACTTTATCTGGACTTTTGA
AA sequence Show only first row Show all	>Potri.004G091300.2 pacid=42794488 polypeptide=Potri.004G091300.2.p locus=Potri.004G091300 ID=Potri.004G091300.2.v4.1 annot-version=v4.1 MMTGEIWTQLSSAITGLVLAWVMFEQYFPYQLRGYLHKYSQKLMSYAYPYIQVTFHEFTSERLKRSEAFSAIQSYLGSNSTKNAKRLKADVVRNNEPLVL TMDDYEEVTDVFDGVKVWWSSSKTVPKTQSISFYPAADERRHYRLTFHKSNRDVITKKYIEHVLKEGKLIAVKNRQRKLFTNNPSENWYGWKSTKWSHVV FEHPATFDTLAMETKKKEEIKKDLTKFSKGKDYYAKIGKAWKRGYLLYGPPGTGKSTMISAMANLLDYDIYDLELTTVKDNSELRKLLIETTGKSIIVIE DIDCSLDLTGQRKKTKEKDDDDQSDKEKDPVSKKKRRLKKKEKAAARLLYLDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091300 [exp]	0	1
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.012G066700 [exp]	1.00	0.9301
AT1G34750			Protein phosphatase 2C family ...		Potri.005G164600 [exp]	1.41	0.9247
AT1G66920			Protein kinase superfamily pro...		Potri.015G018200 [exp]	2.00	0.9166
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.019G123500 [exp]	4.89	0.9175
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.015G049000 [exp]	5.00	0.9166
AT2G19460			Protein of unknown function (D...		Potri.006G147700 [exp]	9.16	0.9115
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	9.16	0.9043
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131300 [exp]	9.79	0.8907
AT4G17900			PLATZ transcription factor fam...		Potri.003G092800 [exp]	10.95	0.8914
AT4G28400			Protein phosphatase 2C family ...		Potri.006G081400 [exp]	12.12	0.8774

Compare expression of checked genes

Potri.004G091300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.