Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 581 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 558 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 546 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 511 / 2e-178 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28520 450 / 9e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 449 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 446 / 3e-153 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 420 / 5e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 406 / 5e-138 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57480 342 / 3e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G012500 [exp] 642 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 639 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 639 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 597 / 0 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 583 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 583 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 577 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 573 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 565 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015354 [exp] 644 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 603 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 600 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 564 / 0 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 531 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 518 / 0 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005256 [exp] 512 / 2e-176 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 501 / 2e-174 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10032188 [exp] 498 / 2e-173 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014284 [exp] 332 / 2e-108 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.004G091500.1 pacid=42795909 polypeptide=Potri.004G091500.1.p locus=Potri.004G091500 ID=Potri.004G091500.1.v4.1 annot-version=v4.1 ATGATGACTGGAGAAATATGGACTCAACTGAGCTCGGCCATTACTGGCCTAGTGCTTGCGTGGGTCATGTTTGAGCAATATTTTCCTCATCAACTTCGTG GCTATCTTGAAAAATATAGTCAGAAGTTAATGAGCTATGTGTATCCTTACATCCAAATTACCTTTCATGAATTCACAAGTGAACGTCTCAAGCGCAGCGA GGCCTTTTCTGCCATTCAGAGTTATCTCGGCTCCAATTCTACCAAGACTGCTAAGAGACTCAAGGCTGATGTTGTCAGAAACAACGAGCCCTTGGTCCTC ACCATGGACGATTACGAAGAAGTTACCGATGTTTTTGATGGGGTTAAGGTCTGGTGGTCTTCCAGTAAAACTGTCCCGAAAACACAATCTATTTCTTTTT ATCCTGCAGCCGATGAGAGGAGGCATTACAGGCTCACGTTCCACAAAAGAAATCGAGATGTCATCACCGAGAAATATATAGAACATGTTAGGAAAGAAGG GAAGGCGATTGCTGTGAAGAACAGGCAGAGAAAGCTCTTCACCAACAATTCTAGTAAGAATTCGTATGCGTGGAAATCTACCAAGTGGAGTCATGTGGTT TTTGAGCACCCCGCTACATTTGATACTCTGGCAATGGAAACAAAGAAGAAGGAAGAGATTAAGAAAGACCTTACCAAATTCAGTAAAGGAAAAGACTATT ATGCGAAGATCGGCAAGGCCTGGAAGCGTGGCTATCTCCTTTATGGCCCTCCAGGAACTGGCAAATCCACCATGATTTCTGCTATGGCTAATTTGTTGGG TTATGATATTTATGATCTTGAGTTGACCACAGTTAAGGACAACAGCGAGCTTAGGAAGCTATTGATCGAAACCACCGGAAAGTCTATCATTGTGATTGAG GATATTGATTGCTCACTTGATCTTACAGGACAGAGGAAAAAAACGAAGGAGAAAGATGATGACGACCAGTCAGACAAAGAGAAGGATCCAGTTTCTAAGA AGAAAAAGGAGGCTGAAGAAGAAAGAAAAAGCGGCAGCAAGGTTACTTTATCTGGACTTTTGAATTTCATTGATGGACTCTGGTCAGCTTGTGGAGGAGA AAGAATCATAGTGTTCACTACCAATTATGTGGACAAACTGGATCCTGCTCTAATAAGGAGAGGAAGGATGGATAAGCATATAGAGTTGTCATATTGCTGC TTTGAGGCGTTCAAGGTGCTAGCCAAGAACTATTTAGAACTCGAATCGCATGAAATGTTCGGAAAAATTGATGAGCTGTTGGGGGAGACAAAGATGACCC CAGCTGATGTTGCTGAGAATTTGATGCCCATGTCAGATGAAGAAGACGAGGAGGATTGTTTGAAGCGATTGATTGAAGGTCTTGAGACTGCAAAGGAGGA AGCTAGGAAAAAAACTAAAGAAGAAGCGGTGTCAAAGGCTGAGAAAGCAGACAAAGAGGGTGGCGAAACATCTTCTCAAGTGGCTAAGGAGAATGGCGAA ATATCAGCAGAAGAAGCGAAAGAGAATGGTGTAATCGCTGGAGGTTAG
AA sequence Show only first row Show all	>Potri.004G091500.1 pacid=42795909 polypeptide=Potri.004G091500.1.p locus=Potri.004G091500 ID=Potri.004G091500.1.v4.1 annot-version=v4.1 MMTGEIWTQLSSAITGLVLAWVMFEQYFPHQLRGYLEKYSQKLMSYVYPYIQITFHEFTSERLKRSEAFSAIQSYLGSNSTKTAKRLKADVVRNNEPLVL TMDDYEEVTDVFDGVKVWWSSSKTVPKTQSISFYPAADERRHYRLTFHKRNRDVITEKYIEHVRKEGKAIAVKNRQRKLFTNNSSKNSYAWKSTKWSHVV FEHPATFDTLAMETKKKEEIKKDLTKFSKGKDYYAKIGKAWKRGYLLYGPPGTGKSTMISAMANLLGYDIYDLELTTVKDNSELRKLLIETTGKSIIVIE DIDCSLDLTGQRKKTKEKDDDDQSDKEKDPVSKKKKEAEEERKSGSKVTLSGLLNFIDGLWSACGGERIIVFTTNYVDKLDPALIRRGRMDKHIELSYCC FEAFKVLAKNYLELESHEMFGKIDELLGETKMTPADVAENLMPMSDEEDEEDCLKRLIEGLETAKEEARKKTKEEAVSKAEKADKEGGETSSQVAKENGE ISAEEAKENGVIAGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091500 [exp]	0	1
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.014G097900 [exp]	3.16	0.9645
AT4G25800			Calmodulin-binding protein (.1...		Potri.013G010700 [exp]	4.24	0.9561
AT4G19950			unknown protein		Potri.005G186200 [exp]	4.24	0.9639	ORF.5
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.015G045300 [exp]	4.89	0.9707
AT1G35710			Protein kinase family protein ...		Potri.014G195200 [exp]	6.00	0.9519
AT2G32030			Acyl-CoA N-acyltransferases (N...		Potri.010G085600 [exp]	7.41	0.9551
AT5G47990		THAD1, THAD, CY...	THALIAN-DIOL DESATURASE, "cyto...		Potri.009G065000 [exp]	8.36	0.9552	CYP705B5
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.012G054900 [exp]	10.67	0.9678	CBP60.6
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.005G215700 [exp]	12.12	0.9608
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.011G007800 [exp]	12.32	0.9597	Pt-WRKY42.1

Compare expression of checked genes

Potri.004G091500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.