Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30390 643 / 0 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 608 / 0 Transmembrane amino acid transporter family protein (.1) AT3G56200 350 / 3e-117 Transmembrane amino acid transporter family protein (.1) AT2G40420 331 / 1e-109 Transmembrane amino acid transporter family protein (.1) AT1G80510 313 / 8e-102 Transmembrane amino acid transporter family protein (.1) AT2G41190 72 / 4e-13 Transmembrane amino acid transporter family protein (.1) AT4G38250 67 / 1e-11 Transmembrane amino acid transporter family protein (.1) AT2G42005 53 / 2e-07 Transmembrane amino acid transporter family protein (.1) AT3G54830 49 / 7e-06 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106300 [exp] 803 / 0 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 525 / 0 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 379 / 6e-128 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 349 / 2e-118 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.003G011900 [exp] 309 / 3e-100 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 300 / 8e-97 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G075500 [exp] 66 / 1e-12 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 57 / 2e-08 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G206800 [exp] 54 / 1e-07 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031964 [exp] 726 / 0 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 725 / 0 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 704 / 0 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 700 / 0 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 528 / 0 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10007716 [exp] 509 / 2e-179 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 498 / 1e-174 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10042864 [exp] 378 / 6e-128 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10028165 [exp] 376 / 4e-127 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003054 [exp] 336 / 9e-111 AT1G80510 663 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF03222 [poplar] [flax] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Potri.004G111400.1 pacid=42796526 polypeptide=Potri.004G111400.1.p locus=Potri.004G111400 ID=Potri.004G111400.1.v4.1 annot-version=v4.1 ATGACAACTGGAAATATTGCTTCGAAGAAGGAGAGGAAATCAAGGAGGAACAAGCCAGTAGATGAGAATGCTCCCTTATTGCCTAAAAGGCAAGAGGATG TTGGTTTTGATGAGTTTAATGGAGCTTCCTTTACTGGGGCTGTGTTCAATTTATCAACTACAATAGTTGGTGCAGGAATCATGGCTTTGCCTGCCACCAT GAAAGTGTTAGGCCTTGTTCTTGGGGTTTCCTTGATCATCTTCATGGCTTTCTTGGCAGAGGCTTCAATTGAGATGTTGCTAAGGTTTAGCAGGGCAGGG AAGTGTGCTTCTTATGGGGGACTTATGGGGGATGCCTTTGGAAAGACTGGAAGGATTATGTTGCAAGTTGCTGTTTTAATCAATAACGTTGGTGTACTCA TTGTGTACATGATTATTATTGGTGATGTGCTGTCTGGAACATCTTCAAGTGGATCCCACCATGCAGGTGTTCTTGAAGGTTGGTTCGGAGAACACTGGTG GAATGCGCGAACCTTTGTTCTTCTTGTCACAACACTTTTTGTATTTTCTCCACTGGCTTGCTTTAAGCGAATTGATTCTTTAAGTTATACATCTGCCTTA TCAGTCGCGCTAGCAGTTGTATTTCTTATCATCACTGTGGGGATCACAATTGTCAAGTTGATAAATGGAAGTATAGCAATGCCCAGATTGATGCCCGATG TAACAGACATGACATCCTTCTGGAAACTCTTCACTACAGTCCCTGTTCTTGTCACTGCATATATCTGCCATTACAATGTTCACAGCATAGATAATGAACT TGAAGACTCTACTCAGATAAAACCAGTTGTGCGAACAGCACTTGCCTTATGCTCATCTGTGTACATGATGACAAGCATCTTTGGGTTCCTTCTATTTGGC GATGCAACTCTTGATGATGTGCTTGCCAACTTTGACACCAACCTTGGCATTCCTTACAGTTCTCTGCTTAATGATGCTGTTCGTGTTAGTTATGCTGCTC ATCTTATGCTAGTATTTCCAATTGTCTTCTTTCCATTAAGACTCAACTTGGATGGCCTCCTCTTTCCCTCAGCTCAACCTTTTCATCAGGCAAACACGAG GTTTGCATTAGTCACCATTGGGCTTATTGCTTTAATCTTCTTGGGTGCAAATTGCATTCCAAGCATCTGGGATGCTTTCCAATTCACTGGAGCAACTGCT GCAGTTTGCCTTGGTTTCATTTTTCCTGCTTCCATCACTCTCAGGGATCGCCACAATATAGCATCAAAGAGAGACAAGATCTTATGTATTTTTATGATTG CGCTTGCCGTCTTCTCCAATGGGGTGGCCATATACAGTGATGCCTATGCCTTGATAAAAAAGAACCCGTCGCCTCGTGAATGA
AA sequence Show only first row Show all	>Potri.004G111400.1 pacid=42796526 polypeptide=Potri.004G111400.1.p locus=Potri.004G111400 ID=Potri.004G111400.1.v4.1 annot-version=v4.1 MTTGNIASKKERKSRRNKPVDENAPLLPKRQEDVGFDEFNGASFTGAVFNLSTTIVGAGIMALPATMKVLGLVLGVSLIIFMAFLAEASIEMLLRFSRAG KCASYGGLMGDAFGKTGRIMLQVAVLINNVGVLIVYMIIIGDVLSGTSSSGSHHAGVLEGWFGEHWWNARTFVLLVTTLFVFSPLACFKRIDSLSYTSAL SVALAVVFLIITVGITIVKLINGSIAMPRLMPDVTDMTSFWKLFTTVPVLVTAYICHYNVHSIDNELEDSTQIKPVVRTALALCSSVYMMTSIFGFLLFG DATLDDVLANFDTNLGIPYSSLLNDAVRVSYAAHLMLVFPIVFFPLRLNLDGLLFPSAQPFHQANTRFALVTIGLIALIFLGANCIPSIWDAFQFTGATA AVCLGFIFPASITLRDRHNIASKRDKILCIFMIALAVFSNGVAIYSDAYALIKKNPSPRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30390			Transmembrane amino acid trans...		Potri.004G111400 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.006G006700 [exp]	11.22	0.6032
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.010G135200 [exp]	14.69	0.6621
AT1G31050	bHLH	bHLH111	basic helix-loop-helix (bHLH) ...		Potri.008G142700 [exp]	15.68	0.6710
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Potri.016G044100 [exp]	16.97	0.6229
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Potri.007G036100 [exp]	18.76	0.6122
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.006G173901 [exp]	24.61	0.6426
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	29.10	0.6280
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.005G126400 [exp]	55.13	0.6041
AT1G21920			Histone H3 K4-specific methylt...		Potri.002G085900 [exp]	56.12	0.5616
AT4G38960	CO		B-box type zinc finger family ...		Potri.009G124400 [exp]	65.26	0.5626

Compare expression of checked genes

Potri.004G111400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.