Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30210 227 / 8e-75 MYB ATMYB121 myb domain protein 121 (.1) AT3G24310 187 / 2e-59 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT4G13480 185 / 1e-58 MYB ATMYB79 myb domain protein 79 (.1) AT3G46130 162 / 1e-49 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT1G68320 162 / 2e-49 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT5G59780 160 / 2e-49 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT1G25340 160 / 8e-49 MYB ATMYB116 myb domain protein 116 (.1.2) AT3G27810 157 / 6e-48 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT1G48000 155 / 5e-47 MYB ATMYB112 myb domain protein 112 (.1) AT5G40350 152 / 2e-46 MYB ATMYB24 myb domain protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118000 [exp] 366 / 9e-131 AT3G30210 209 / 1e-67 myb domain protein 121 (.1) Potri.017G099500 [exp] 293 / 8e-102 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Potri.008G173400 [exp] 197 / 4e-63 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.010G064000 [exp] 193 / 8e-62 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.017G071500 [exp] 155 / 8e-48 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.009G027300 [exp] 156 / 1e-47 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4) Potri.001G346600 [exp] 154 / 1e-47 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.001G235500 [exp] 156 / 2e-47 AT3G46130 276 / 3e-94 myb domain protein 48 (.1.2.3.4) Potri.010G149900 [exp] 155 / 2e-46 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005079 [exp] 214 / 2e-70 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Lus10034372 [exp] 207 / 6e-68 AT3G30210 195 / 5e-62 myb domain protein 121 (.1) Lus10023711 [exp] 191 / 3e-60 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10014453 [exp] 186 / 1e-58 AT3G24310 240 / 1e-78 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10005886 [exp] 161 / 2e-49 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10041142 [exp] 157 / 5e-47 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10041435 [exp] 157 / 6e-47 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10036472 [exp] 157 / 7e-47 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10034338 [exp] 155 / 3e-46 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10022259 [exp] 152 / 7e-46 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G115600.1 pacid=42794571 polypeptide=Potri.004G115600.1.p locus=Potri.004G115600 ID=Potri.004G115600.1.v4.1 annot-version=v4.1 ATGATGGGTAGGGGAATTGCTGAGCAAGGGTGGAGGAAGGGTCCTTGGACTCCTGAAGAGGATAAGTTGCTTAGTGAATATGTGAGCTCGAACGGTGAGG GAAGGTGGAGTTCTGTTTCTAGGTGTTCAGGCTTGAATAGGAGTGGAAAGAGCTGCAGACTGAGGTGGGTGAATTACCTTAGGCCAGGACTCAAGAGAGG CCAAATAACACCACAAGAGGAAGGCATCATTATTGAACTACATGCTCTCTGGGGCAACAAGTGGTCAACTATTGCTAGATACTTGCCTGGTAGAACAGAT AATGAGATAAAAAACTATTGGAGAACCCATTTCAAGAAGACAGATAAATCCTCTCAGAAACAAGAAAAGCGAAAAGCTCTGATTCTCGAACAGGAAGTGC AACACCACCACCAGCAGCAGCAGCAGCTAGAAGCAGGTGAAATGAAAATGGTCAACACCATTGATCATGTTAAGATGCATGAAGCACAAGAAATGTATTT CATGTACCACAATTTGGAGGATCAATGCTCGCCTGTGATGACTCAAGATGTCGCATCTTGGGCAGACTTTGTTGTTGAGGATTATTATGGACTATGGGGT GGCTTGTGGAACTTAGATGATCATCCACAAGGTTAA
AA sequence Show only first row Show all	>Potri.004G115600.1 pacid=42794571 polypeptide=Potri.004G115600.1.p locus=Potri.004G115600 ID=Potri.004G115600.1.v4.1 annot-version=v4.1 MMGRGIAEQGWRKGPWTPEEDKLLSEYVSSNGEGRWSSVSRCSGLNRSGKSCRLRWVNYLRPGLKRGQITPQEEGIIIELHALWGNKWSTIARYLPGRTD NEIKNYWRTHFKKTDKSSQKQEKRKALILEQEVQHHHQQQQQLEAGEMKMVNTIDHVKMHEAQEMYFMYHNLEDQCSPVMTQDVASWADFVVEDYYGLWG GLWNLDDHPQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.004G115600 [exp]	0	1
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.004G118000 [exp]	1.00	0.9826
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Potri.010G064000 [exp]	2.82	0.9404	Pt-MYB305.2
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.015G125501 [exp]	4.58	0.8791
					Potri.002G144101 [exp]	5.91	0.8648
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G030125 [exp]	10.09	0.8706
					Potri.016G013350 [exp]	11.48	0.8230
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.007G111800 [exp]	12.36	0.8619
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.011G125900 [exp]	12.84	0.8552
					Potri.017G142966 [exp]	12.96	0.7645
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Potri.008G076700 [exp]	13.85	0.8024

Compare expression of checked genes

Potri.004G115600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.