Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15450 1567 / 0 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 1249 / 0 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT1G74310 845 / 0 HOT1, ATHSP101 heat shock protein 101 (.1) AT3G48870 676 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G50920 614 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT4G14670 538 / 0 CLPB2 casein lytic proteinase B2 (.1) AT5G51070 329 / 9e-98 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT3G45450 164 / 1e-44 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 67 / 4e-11 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 67 / 6e-11 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090600 [exp] 1729 / 0 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.006G262700 [exp] 1252 / 0 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.015G057000 [exp] 850 / 0 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 849 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.012G105900 [exp] 670 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 667 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.005G197400 [exp] 321 / 5e-99 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 323 / 9e-96 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 322 / 5e-95 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030705 [exp] 1613 / 0 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 1590 / 0 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10041018 [exp] 1283 / 0 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10021159 [exp] 809 / 0 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10040528 [exp] 756 / 0 AT1G74310 1496 / 0.0 heat shock protein 101 (.1) Lus10036017 [exp] 655 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 655 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 654 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10013459 [exp] 558 / 0 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10040527 [exp] 462 / 1e-152 AT1G74310 906 / 0.0 heat shock protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF02861 [poplar] [flax] Clp_N Clp amino terminal domain, pathogenicity island component CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily) CL0671 [poplar] [flax] AAA_lid PF10431 [poplar] [flax] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Potri.004G124800.1 pacid=42796431 polypeptide=Potri.004G124800.1.p locus=Potri.004G124800 ID=Potri.004G124800.1.v4.1 annot-version=v4.1 ATGGCAACCACGACCGCTACGGCGGCTTCGTTTAGTTTGTGTCCTTTCTATTCAGATTCTATCAGTAATGGTTTGTTACCCCGAAAGTCTCTTATAAGCT TCCCCGTAAAGCGGAATTCTGTGAAGTCGCTGGAGTTGAACAAGAGAAATGGTGCCTTTTCGACAAGGGCTAAACCCTCTTCCTTTGTCGTTAGATGTGC TGCTTCTTCTAATGGAAGGGTTACGCAGCAAGAATTTACAGACATGGCATGGCAAGGAATTGTATCTTCTCTAGATGTGGCGAAAGAGAACAAGCATCAG ATAGTGGAGACGGAGCATTTGATGAAAGCCCTCTTGGAGCAAAAGAATGGCCTTGCTCGCCGCATCTTTTCCAAAGTTGGGGTTGATAATACTCGTCTTC TTGAAGCCACCGACAAGTCTATACAACGCCAACCCAAGGTTCATAGCGAATCTACTAGTTCAATGTTGGGGCGTGACTTGGAGACCCTGATCCAGCGAGC CAGGGAATACAAGAAAGAGTATGGAGATTCATTTGTTTCTGTTGAGCATTTGGTTCTTGGATTTGCTCAGGATCAACGGTTTGGGAAGCAATTATTTAAG GATTTCCAAATATCTTTACAAACTCTGAAATCTGCAATAGAATCCATTAGGGGGCGCCAATCAGTTATAGACCAAGATCCCGAAGGGAAGTATGAAGCAC TGGAGAAGTATGGAAAAGATTTGACAGCCATGGCAAAAGCAGGAAAGCTTGACCCAGTTATTGGAAGGGATGAGGAAATCCGTAGATGCATCCAGATTCT ATCCAGGAGAACGAAAAACAATCCTGTGCTTATTGGTGAACCAGGTGTGGGGAAAACTGCAATTTCCGAAGGGCTTGCCCAGAGAATTGTGGAAGGGGAT GTACCTCAAGCTTTGATGAACCGGAAGCTAATATCCCTTGACATGGGTTCCCTCATTGCTGGGGCGAAATATCGAGGAGAATTTGAGGATAGATTGAAGG CTGTACTTAAGGAAGTCACGGATTCAGATGGTCAGATAATCCTTTTCATTGATGAGATTCACACAGTGGTTGGTGCTGGAGCCACAAATGGGGCGATGGA TGCGGGGAATCTCTTGAAACCCATGCTTGGCAGGGGAGAGTTGCGATGTATTGGTGCAACAACACTGGACGAGCATCGTAAGTATATTGAGAAAGATCCT GCTTTGGAGCGTCGTTTCCAGCAAGTTTTTGTTGATCAACCTACAGTAGAGGATACAATATCTATACTCCGGGGACTGCGTGAAAGATATGAGCTGCATC ATGGAGTCCGTATTTCTGATAGTGCACTTGTGGAGGCTGCGGTTCTGTCTGACCGTTACATCAGTGGAAGATTTTTACCTGACAAAGCTATTGATCTAGT TGATGAAGCAGCTGCAAAACTGAAAATGGAAATTACTTCAAAGCCTACTGCCCTAGATGAAATCAACCGTTCAGTATTAAAGCTGGAGATGGAGAGGTTA TCTCTTATGAATGACACAGATAAAGCTTCAAAAGATAGGTTGAGCCGCCTTGATACTGAGTTATCTCTGCTAAAAAAGAAACAAGCTGAGCTGACAGAGC AATGGGAGCACGAGAAGTCTGTCATGACATGCATTCAATCAATTAAAGAAGAGATTGACAGGGTAAATCTTGAGATTCAGCAGGCTGAGCGAGAGTATGA TCTAAATCGTGCTGCTGAATTGAAGTATAGGAGCCTGAGCTCTCTGCAACGCCAACTTGAAAGTGCTGAAAAGGAGTTGGATGAGTATATAAAGTCAGGA AAGTCCATGCTGAGAGAAGAAGTAACAGGTGATGACATTGCTGAAATTGTTAGCAAGTGGACTGGTATTCCTATTTCCAAGCTTAAACAATCTGAGAGGG AGAAGCTATTACATTTGGAAGATGAACTGCATAAACGTGTGGTGGGCCAGGACCCTGCGGTGAAAGCAGTAGCTGAGGCCATTCAGCGATCTCGTGCTGG TCTCTCAGATCCTCACCGTCCAATTGCTAGTTTCATGTTCATGGGCCCCACTGGTGTTGGAAAAACAGAACTAGCTAAAGCCCTAGCTTCCTATATGTTC AACACTGAAGAAGCCCTTGTACGAATTGATATGAGTGAATACATGGAAAAGCATTCAGTCTCACGATTAGTAGGAGCCCCACCTGGTTATGTAGGGTATG AAGAAGGGGGGCAGTTAACAGAGACAGTTCGCAGGAGGCCGTATGCAGTTATTCTCTTTGATGAGATAGAAAAGGCTCACTCTGACGTGTTTAATATCTT CCTTCAGGTTTTGGATGATGGTAGGGTGACTGATTCACAAGGTCGCACTGTCAGTTTCACGAACACTGTCATCATTATGACTTCAAACGTGGGTTCACAA TATATACTCGACACAGATGATAACTTGCCAAAGGAGGTAGCTAATGAAACAATTAAGAGGAGGGTAATGGATGCTGCTAGATCAGTCTTTCGGCCTGAGT TCATGAATAGGGTTGATGAGTACATAGTTTTCCAGCCTCTGGATCGTGATCAGATAAACAGTATTGTCAGGTTACAGCTCGGACGTGTCCAGCAAAGGCT TGCAGACCGAAAGATTAAATTATTGGTCACCGATGCAGCTGTAGAGTTTCTAGGGACTCTTGGGTATGATCCCAACTATGGTGCTAGGCCAGTCAAAAGG GTGATTCAGCAGCATGTTGAAAACGAACTTGCCAAGGGTATCTTGAGAGGGGAATTGAAGGATGAGGATTCTGTCGCAATAGATACGCAGGTTACAGCAT TTGCTAATGGCCACCTCCCCCAACAAAAGCTAGTTTTCAAGCGTCTGGAAACTAGTGAAGATAAGGCTGCTGCAGAAAGTCGAGCTTTTTCACAGACTGT CTAA
AA sequence Show only first row Show all	>Potri.004G124800.1 pacid=42796431 polypeptide=Potri.004G124800.1.p locus=Potri.004G124800 ID=Potri.004G124800.1.v4.1 annot-version=v4.1 MATTTATAASFSLCPFYSDSISNGLLPRKSLISFPVKRNSVKSLELNKRNGAFSTRAKPSSFVVRCAASSNGRVTQQEFTDMAWQGIVSSLDVAKENKHQ IVETEHLMKALLEQKNGLARRIFSKVGVDNTRLLEATDKSIQRQPKVHSESTSSMLGRDLETLIQRAREYKKEYGDSFVSVEHLVLGFAQDQRFGKQLFK DFQISLQTLKSAIESIRGRQSVIDQDPEGKYEALEKYGKDLTAMAKAGKLDPVIGRDEEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVEGD VPQALMNRKLISLDMGSLIAGAKYRGEFEDRLKAVLKEVTDSDGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEHRKYIEKDP ALERRFQQVFVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAVLSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERL SLMNDTDKASKDRLSRLDTELSLLKKKQAELTEQWEHEKSVMTCIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYRSLSSLQRQLESAEKELDEYIKSG KSMLREEVTGDDIAEIVSKWTGIPISKLKQSEREKLLHLEDELHKRVVGQDPAVKAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF NTEEALVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTETVRRRPYAVILFDEIEKAHSDVFNIFLQVLDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ YILDTDDNLPKEVANETIKRRVMDAARSVFRPEFMNRVDEYIVFQPLDRDQINSIVRLQLGRVQQRLADRKIKLLVTDAAVEFLGTLGYDPNYGARPVKR VIQQHVENELAKGILRGELKDEDSVAIDTQVTAFANGHLPQQKLVFKRLETSEDKAAAESRAFSQTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.004G124800 [exp]	0	1
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.010G051900 [exp]	5.38	0.9462
AT5G53750			CBS domain-containing protein ...		Potri.004G041000 [exp]	10.81	0.8846
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Potri.004G129200 [exp]	13.11	0.9429
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.004G002600 [exp]	14.49	0.9316
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Potri.014G162200 [exp]	15.29	0.9410
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	16.49	0.9359
AT1G76570			Chlorophyll A-B binding family...		Potri.005G258600 [exp]	25.29	0.9298
AT3G06980			DEA(D/H)-box RNA helicase fami...		Potri.010G004700 [exp]	25.33	0.9311
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.006G043092 [exp]	27.44	0.8629
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Potri.001G044000 [exp]	29.46	0.9309

Compare expression of checked genes

Potri.004G124800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.