Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28910 310 / 2e-104 MYB AtMYB30, MYB30 myb domain protein 30 (.1) AT3G47600 306 / 1e-102 MYB ATMYB94, AtMYBCP70 myb domain protein 94 (.1) AT5G62470 296 / 9e-99 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT1G74650 289 / 2e-96 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT1G08810 262 / 2e-86 MYB ATMYB60 myb domain protein 60 (.1.2) AT5G15310 191 / 5e-58 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G61250 188 / 3e-57 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT3G01140 186 / 2e-55 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT3G23250 182 / 3e-55 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT3G02940 182 / 1e-54 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082500 [exp] 488 / 1e-174 AT3G47600 319 / 2e-108 myb domain protein 94 (.1) Potri.013G067500 [exp] 280 / 5e-93 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.019G045900 [exp] 273 / 3e-90 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.017G086300 [exp] 194 / 2e-58 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.005G224100 [exp] 186 / 1e-56 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.012G140700 [exp] 185 / 3e-56 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.019G118200 [exp] 187 / 4e-56 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.002G157600 [exp] 185 / 5e-56 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.010G165700 [exp] 185 / 3e-55 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002056 [exp] 307 / 2e-103 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10042200 [exp] 290 / 8e-96 AT5G62470 330 / 2e-111 myb domain protein 96 (.1.2) Lus10024218 [exp] 286 / 9e-96 AT3G47600 305 / 2e-103 myb domain protein 94 (.1) Lus10015369 [exp] 283 / 8e-94 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10008616 [exp] 280 / 1e-91 AT3G47600 322 / 2e-108 myb domain protein 94 (.1) Lus10030677 [exp] 269 / 1e-88 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10005245 [exp] 257 / 5e-84 AT3G47600 289 / 6e-97 myb domain protein 94 (.1) Lus10009522 [exp] 250 / 3e-81 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10020343 [exp] 242 / 5e-78 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10033003 [exp] 190 / 5e-57 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G126700.1 pacid=42794549 polypeptide=Potri.004G126700.1.p locus=Potri.004G126700 ID=Potri.004G126700.1.v4.1 annot-version=v4.1 ATGCTTGTTCTATCTTTAGAAAAGATAAAGCAATTTCAAGAGAAGAGAAGAATTAAAGCAAGGGTAGTGTTCTTACTCGAGAGAAAGAAATCTTGGAGGC AGGCTTGTGAGAAAGGAAGAAACAAAGTGATCATGGGCAGACCACCTTGCTGTGATAAGATAGGAGTGATGAAAGGACCATGGACTCCTGAAGAAGATAT CATTTTGGTATCATATATTCAAGAACATGGTCCTGGAAATTGGAGAGCCGTGCCTACTAATACAGGTTTGCTTAGATGCAGTAAGAGTTGCAGGCTGAGA TGGACTAATTACCTCAGGCCAGGGATCAAACGTGGTAATTTTACCCATAACGAGGAGAAGATGATAATCCACCTCCAAGCCCTTCTAGGCAACAGATGGG CTGCCATAGCTTCATACCTCCCTCAGAGAACAGATAACGACATTAAAAACTATTGGAATACACATTTGAAGAAGTTGAAAAAGCTTCAAGCAGGGCAAGA AGGTCAGTTTAGGCAAATTTCTAGAGGCCAATGGGAGAGGAGGCTTCAAACTGATATCCACATGGCTAGGCAAGCTCTAAGCGAGGCCTTGTCTCCTGAG AAACCAAACAGCTTATTAACTGAGTTGAAACCGTCCTGTGGGTATGAAAAACCAGCTCCAGCATCACTCTATGCATCAAGCACTGAAAACATAGCTAAGT TGCTCAAAGGTTGGATGAGAAGCGGGCCTAACCAGTCCCTAACAAATTCAACAACTACTCAGAATTCCTTCAACAATATGGCTGTAGCTGATTCATTTTC TAGTGAAGAGACTCTAAATAGAGCAGACGAAAATGACACTGAATTATCAGAGGCATTTGAATCACTCTTTGGTTTTGACTCTTCAAATATAGATTTCTCC CAGTCAACGTCACCTGATACTGGCCTTCTCCAAGACGAAAGCAAACCAAATTCCAGTGCTCAAGTGCCATTGTCAGTGATTGAGAGGTGGCTATTTGATG AAGGAGCTATGCAAGGGAAAGAGTACCTTAGTGAAGTCACACCAGATGAAAATAATCTCTTCTAG
AA sequence Show only first row Show all	>Potri.004G126700.1 pacid=42794549 polypeptide=Potri.004G126700.1.p locus=Potri.004G126700 ID=Potri.004G126700.1.v4.1 annot-version=v4.1 MLVLSLEKIKQFQEKRRIKARVVFLLERKKSWRQACEKGRNKVIMGRPPCCDKIGVMKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLR WTNYLRPGIKRGNFTHNEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKLKKLQAGQEGQFRQISRGQWERRLQTDIHMARQALSEALSPE KPNSLLTELKPSCGYEKPAPASLYASSTENIAKLLKGWMRSGPNQSLTNSTTTQNSFNNMAVADSFSSEETLNRADENDTELSEAFESLFGFDSSNIDFS QSTSPDTGLLQDESKPNSSAQVPLSVIERWLFDEGAMQGKEYLSEVTPDENNLF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Potri.004G126700 [exp]	0	1
AT2G42750			DNAJ heat shock N-terminal dom...		Potri.014G143400 [exp]	3.00	0.9631
AT5G05200			Protein kinase superfamily pro...		Potri.019G061300 [exp]	5.09	0.9570
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022200 [exp]	7.34	0.9558
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014301 [exp]	10.09	0.9475
AT1G30260		AGL79	unknown protein		Potri.011G081001 [exp]	10.19	0.9421
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.002G045100 [exp]	10.19	0.9526
AT5G23240			DNAJ heat shock N-terminal dom...		Potri.007G072600 [exp]	10.81	0.9411
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.011G025200 [exp]	11.48	0.9373
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022280 [exp]	14.00	0.9427
AT3G05270			Plant protein of unknown funct...		Potri.005G178100 [exp]	18.76	0.9359

Compare expression of checked genes

Potri.004G126700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.