Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38620 256 / 1e-84 MYB AtMYB4 myb domain protein 4 (.1) AT2G16720 253 / 2e-83 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G09460 251 / 4e-83 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT4G34990 244 / 4e-80 MYB ATMYB32 myb domain protein 32 (.1) AT1G22640 241 / 5e-79 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT1G35515 232 / 4e-76 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT3G02940 213 / 4e-67 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 213 / 1e-66 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G21440 210 / 9e-66 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 207 / 2e-65 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T011400 [exp] 435 / 3e-154 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011525 [exp] 435 / 3e-154 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.013G109300 [exp] 263 / 6e-87 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.019G081500 [exp] 259 / 1e-85 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.004G174400 [exp] 255 / 3e-84 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.009G134000 [exp] 253 / 1e-83 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.005G112000 [exp] 250 / 1e-82 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.010G114000 [exp] 222 / 5e-72 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.017G128900 [exp] 214 / 2e-68 AT4G09460 222 / 6e-73 myb domain protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000411 [exp] 258 / 4e-85 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 258 / 5e-85 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10001548 [exp] 254 / 1e-83 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10009448 [exp] 252 / 4e-83 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10033473 [exp] 243 / 8e-80 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10014129 [exp] 253 / 4e-78 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10028435 [exp] 235 / 3e-77 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10041888 [exp] 235 / 4e-77 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10018418 [exp] 212 / 1e-66 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 207 / 2e-64 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G138000.1 pacid=42795862 polypeptide=Potri.004G138000.1.p locus=Potri.004G138000 ID=Potri.004G138000.1.v4.1 annot-version=v4.1 ATGGGCAGATCTCCTTGCTGTGAGAAAGAACACACCAACAAAGGTGCATGGACTAAAGAAGAAGATGAACGTCTTGTTAATTATATCAAAGCTCAAGGTG AAGGTTGTTGGAGATCTCTCCCTAAGGCTGCTGGTTTGCTTAGATGTGGCAAGAGTTGTAGACTAAGGTGGATAAACTACCTAAGGCCTGATCTCAAGAG AGGAAACTTCAGTGATGAAGAAGATGAACTCATCATCAACCTTCACAGCTTACTTGGTAACAAGTGGTCTCTCATTGCTGCTAGGCTACCAGGAAGAACT GACAATGAGATAAAGAATTATTGGAATACTCATATCAAAAGGAAGCTTTTTACCCGTGGAATTGATCCTCAAACTCACCGTCCACTCAAATCCACCACCA CCACCACCTCCTCCTCCACCACCACCACCACCACTACTAACAGCACCAACAATAAAAATAGCAAACTGGATACCAAAAGGAGTACTGATTTTCAACTGGA AGAACAAAACTATTCGTTTCTTCAAGTGCAGCCTGAGTTTACGATGAGCAACATGACCAAAACGGAAAACAATTCCAGTATTATCAAGGTAGGTGGCAGC AGTGACTCGGCTGAAGATTCCAATAGTAGCAGTGGAGTGACAACAGAACTAGAAGTGTATCCAGATCATAAACTGGTCAATCTTGAGCTCTCTATTGGCC TTCCGTGTCAGTCTCTAGTCTCTTCTATGAACAATCTTAAGCAAGCAAAACAACAAGAACAAGAAGAAGTGGTCACACATCAATTGTTTGAGACATCTAC TACTCCTACTTCTAGTGCTCCTGTTTCTGTTCATAAAGCAGCATGTTTGTGTTACAAACTAGGGTTCAAGAACAGTCAAGCATGTAGCAGTTGTAATGCC ATGGAAAAAACAGTAACAGCTGATAATCTTCATAGATTTTACAGACCTTTGGATGCTTGA
AA sequence Show only first row Show all	>Potri.004G138000.1 pacid=42795862 polypeptide=Potri.004G138000.1.p locus=Potri.004G138000 ID=Potri.004G138000.1.v4.1 annot-version=v4.1 MGRSPCCEKEHTNKGAWTKEEDERLVNYIKAQGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSDEEDELIINLHSLLGNKWSLIAARLPGRT DNEIKNYWNTHIKRKLFTRGIDPQTHRPLKSTTTTTSSSTTTTTTTNSTNNKNSKLDTKRSTDFQLEEQNYSFLQVQPEFTMSNMTKTENNSSIIKVGGS SDSAEDSNSSSGVTTELEVYPDHKLVNLELSIGLPCQSLVSSMNNLKQAKQQEQEEVVTHQLFETSTTPTSSAPVSVHKAACLCYKLGFKNSQACSSCNA MEKTVTADNLHRFYRPLDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.004G138000 [exp]	0	1
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.014G087000 [exp]	4.47	0.7436
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G022700 [exp]	14.00	0.6954	Pt-KNAT3.3
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.005G231250 [exp]	23.06	0.6480
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G019900 [exp]	37.41	0.6198
AT4G35510			unknown protein		Potri.005G102000 [exp]	39.57	0.6861
AT2G38640			Protein of unknown function (D...		Potri.006G113400 [exp]	41.83	0.6883
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	42.81	0.6885
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Potri.012G038300 [exp]	53.44	0.6493	Pt-EPR1.2
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Potri.005G200000 [exp]	54.40	0.6874
AT4G35510			unknown protein		Potri.007G063000 [exp]	54.99	0.6548

Compare expression of checked genes

Potri.004G138000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.