Plant FIBer expression Database

(),of,part,SWI3.3,CHB902 (Potri.004G153300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol (),of,part,SWI3.3,CHB902
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34430 704 / 0 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
AT1G21700 168 / 9e-43 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1)
AT2G33610 130 / 8e-32 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
AT2G47620 115 / 1e-26 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1)
AT3G07740 56 / 2e-07 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4)
AT4G16420 50 / 5e-06 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G114900
[exp]
1451 / 0 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Potri.005G180800
[exp]
166 / 4e-42 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Potri.002G080600
[exp]
165 / 1e-41 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Potri.015G100400
[exp]
140 / 2e-34 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1)
Potri.002G004800
[exp]
87 / 2e-17 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Potri.016G007600
[exp]
59 / 1e-08 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3)
Potri.006G017300
[exp]
59 / 1e-08 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3)
Potri.014G166300
[exp]
56 / 2e-07 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023583
[exp]
752 / 0 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Lus10040472
[exp]
749 / 0 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Lus10026334
[exp]
746 / 0 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Lus10042329
[exp]
702 / 0 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Lus10042734
[exp]
158 / 2e-39 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Lus10029695
[exp]
157 / 3e-39 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Lus10016043
[exp]
145 / 1e-36 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Lus10025165
[exp]
136 / 9e-33 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Lus10032555
[exp]
130 / 2e-31 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1)
Lus10043188
[exp]
130 / 3e-31 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF00249 Myb_DNA-binding Myb-like DNA-binding domain
CL0006 C1 PF00569 ZZ Zinc finger, ZZ type
CL0006 PF16495 SWIRM-assoc_1 SWIRM-associated region 1
Representative CDS sequence
>Potri.004G153300.1 pacid=42794956 polypeptide=Potri.004G153300.1.p locus=Potri.004G153300 ID=Potri.004G153300.1.v4.1 annot-version=v4.1
ATGGAGGAGAAACCGGCGGGGAGCTTTGCCGACTCGCCGGCGTCATTTGAACCGGCAACTTCAAGGCGCCGGGCTGGAGGGCACAAAAGGAAAGCTTCAC
TTTCAAACTCGCTCTCCTCACCTCTATCATCGAAACGGCTCACTCGCGAGAAAGCTGGATTTTCTAATCTCTCGATCCATAACGGTCCGTTGACTAGAGC
GAGACAAATCCCTTACATCTTGGCTTCTTCGGCGCCTTCAGCAGGCGTGAAGATCGAACAGAAGGTAGTTGCGGCGGTGCCGGATGCTGCTGCGGTGGTG
GAGGAGGAGAGGAGGAGTAGGGTGGAGGAATTGCAAGCAGAAATTGAAGCAGAGTTTGAGGTTATTAGATCTCGTGATTCTAATGCTCATGTTGTGCCTA
GTCATTGTGGTTGGTTTTCATGGACACAAATTCACTCGCTTGAGGAGCGTTTACTGCCTTCATTCTTTAATGGGAAGTCCCAAAGCCGGACACCTGACAC
CTATTTAGATATACGTAATTGGATTATGAAGAAGTTTCATGCAAATCCAAACATTCTTATTGAATTGAAAGATTTATCAGAACTTGAAGTTTCAGACTCA
GAAGCGAGGCAGGAGGTGTTAGAGTTCTTGGACTATTGGGGATTAATTAACTTCCATCCATTACAATTAGATTCTGTTACAAACGCTGATGGTGATGGAG
CAGCAAAGAAAGATTTGTCACTTGAAAAGTTGTTTCGCTTTGAAGCCATTCAAACATGTCCACCTGTTGTTACTAAACCTAACTTCACAGCTCCAACTAC
ACCATCTAGATTGTTTCCTGAGTCGGCAATTGCTGAAGAGTTGGCTAAGCTTGAGGGGCCATCTGTTGAGTACCACTGCAATTCTTGTTCAGCTGATTGC
TCGCGCAAGCGCTATCATTGCCAGAAGGAGGCAGATTATGATTTATGTGCCGATTGCTTTAATAATAGAAAGTTTGGCTCAAACATGTCCTCATCAGATT
TTATTCTCATGGAGCCTGCTGAGGCTGCTGGTGTAAGTGGTGGAAAGTGGACAGATCAAGAGACTCTACTTCTTCTTGAAGCATTGGAACTCTATAAAGA
AAACTGGAATGAGATTGCAGAACATGTTGCCACAAAAACGAAGGCTCAGTGTATATTGCACTTTGTTCAAATGCCAATTGAGGATGCCTTTTTTGACTGC
GCCAATGATATGGATGGTACTTCTAAAGAAACAGCAGATGCTGATGCAACCATTGAAGACACATCTGCCCCTAAAGATGTCCATGATACAAGTGAGAGTA
AAACAGGTGCTGATGAGGATCAACACTTGACTGTGCCAATGGAAGCTTCAAAACCAGAAGATACGAGTGGAGTAAAAGTTTGTCAGGGAGGTGATGTGAT
TAATGGTCAGGAAACTTCAAAATCAGAAGATGTCAGTGGAGTGAAGGCTGGTGAGGAAATAGGTGAAAATGTTGCACTCAGGGCTCTTACAGAAGCATTT
GAAGCTGTTGGCTATTCCCCAACTCCTGAAAACCGACTTTCATTTTCTGAAGTTGGAAATCCTGTCATGGCTGTGGCATCGTTTCTGGCAAGATTGGTGG
GACCTGATGTCGCTACTGCTTCAGCCTGCAGTGCTTTGAAATCCTTGTCTAGCAATTCTCCTGGCATGCAGCTGGCATCAAGGCATTGCTTTCTCCTGGA
AGATCCACCAGATGAGAGAAAGAAACCATCTTGCAGTGATTGTGTTGCTACTGAAATGGCTGATCAGGATGCTCTAAAGGACAAGCAGGAGGGAAAAAGC
CAGAAAGGGAATAGCCCTACCTCAGGTATAGACAACAAAGATTTGTCAGATGATTACAGTGACAAGAAAGTTGAAGACTCCATTCCTGAAGAGAAGAAAC
CTCTGGATTCTTCAAAAGGTGAATTCCCAGATAAAGTAGATGTTGTAAATGGAGGAGAGATGGTGGTTACTCATGAGGAAGTTGAACCTGGTAGATCAAA
GGAATCTAGCAATTCAGAGTTACCTAAGGACCACACACCAAGTGTTGTAAAGGAATCAGACGAGATACCGCCCAAGTCAGGGTGTCCACCAAGCTCAGGG
AAGGAACCACTGGAAGTAACTTCAGCTGAAGAGCATTCTCAGCTTACAGAGGTGGCTAAGGATGTGGATATGGTGTCTAATTTGAAGCCTCCAGAAAAGA
ATGGGCATTCTCAATCATTTGCATCAATGTCAGTTGATGAACCCTCTCAAGCTGTTGATGTGTCAAAGGACGTGGACATGGTGTCTGATTCTCTGCCTGC
AGACAACAATGGGTCACAGCAACCAGTGAAATCAAATGCAACAGGAGAGCAGTCTCAAACTACAGAGGCAACAGCTGATGTAGACATGTCATCTTCACAG
CCTTCAGAAGTGAACGAGCCCTCAGATCCAAAGGTTGAAAGTGGAGCCACTGCAGATGAGGTTCCAAAAGACAGCAAGAAAGAGAAGCCTGATAGTGAAG
TGATTAAAGATGACAATAACATTGATAAACTGAAGCGTGCTGCAGTTTCAGCTCTCTCAGCAGCAGCAGTGAAGGCAAAACTTCTTGCAAACCAGGAAGA
GGACCAAATTCGGGAACTTGCTGCCTCATTGATTGAGAAGCAGTTACATAAGTTGGAAACCAAGCTGGCTTTCTTTAATGAAATGGATAGTGTAATAATG
AGGGTGAGGGAGCAACTGGACAGGTCAAGGCAGAGACTTTACCAAGAACGAGCTCAGATAATTGCAGCCCGACTTGGTTTACCACCTTCATCTAGAGCAA
TGCCACAATCATTACCTTCCAACAGAATTGCAATGAACTTTGCAAACACATTTCCGAGACCACCAATGAACATGGCTACCCAAAGGCCACCAATTTCAAC
ACCGATGGGTACATTGGCTAATACCCCTCCTGGAACATTTGTGTCAACAACCACTGCAGCAGGAAATTCAATTCGGCCTTCTAGTCAGGAAAAAATTTCT
TCAATTGGAACAAAGTAG
AA sequence
>Potri.004G153300.1 pacid=42794956 polypeptide=Potri.004G153300.1.p locus=Potri.004G153300 ID=Potri.004G153300.1.v4.1 annot-version=v4.1
MEEKPAGSFADSPASFEPATSRRRAGGHKRKASLSNSLSSPLSSKRLTREKAGFSNLSIHNGPLTRARQIPYILASSAPSAGVKIEQKVVAAVPDAAAVV
EEERRSRVEELQAEIEAEFEVIRSRDSNAHVVPSHCGWFSWTQIHSLEERLLPSFFNGKSQSRTPDTYLDIRNWIMKKFHANPNILIELKDLSELEVSDS
EARQEVLEFLDYWGLINFHPLQLDSVTNADGDGAAKKDLSLEKLFRFEAIQTCPPVVTKPNFTAPTTPSRLFPESAIAEELAKLEGPSVEYHCNSCSADC
SRKRYHCQKEADYDLCADCFNNRKFGSNMSSSDFILMEPAEAAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDAFFDC
ANDMDGTSKETADADATIEDTSAPKDVHDTSESKTGADEDQHLTVPMEASKPEDTSGVKVCQGGDVINGQETSKSEDVSGVKAGEEIGENVALRALTEAF
EAVGYSPTPENRLSFSEVGNPVMAVASFLARLVGPDVATASACSALKSLSSNSPGMQLASRHCFLLEDPPDERKKPSCSDCVATEMADQDALKDKQEGKS
QKGNSPTSGIDNKDLSDDYSDKKVEDSIPEEKKPLDSSKGEFPDKVDVVNGGEMVVTHEEVEPGRSKESSNSELPKDHTPSVVKESDEIPPKSGCPPSSG
KEPLEVTSAEEHSQLTEVAKDVDMVSNLKPPEKNGHSQSFASMSVDEPSQAVDVSKDVDMVSDSLPADNNGSQQPVKSNATGEQSQTTEATADVDMSSSQ
PSEVNEPSDPKVESGATADEVPKDSKKEKPDSEVIKDDNNIDKLKRAAVSALSAAAVKAKLLANQEEDQIRELAASLIEKQLHKLETKLAFFNEMDSVIM
RVREQLDRSRQRLYQERAQIIAARLGLPPSSRAMPQSLPSNRIAMNFANTFPRPPMNMATQRPPISTPMGTLANTPPGTFVSTTTAAGNSIRPSSQEKIS
SIGTK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G34430 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3... Potri.004G153300
[exp]
0 1 (),of,part,SWI3.3,CHB902
AT3G06250 FAR1_related FRS7 FAR1-related sequence 7 (.1) Potri.008G199300
[exp]
17.83 0.6843
AT4G03430 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE... Potri.013G135300
[exp]
23.66 0.6571
Potri.017G058800
[exp]
31.01 0.6148
AT5G08450 unknown protein Potri.004G135800
[exp]
34.72 0.6497
AT5G45300 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2... Potri.003G106500
[exp]
48.16 0.6390
AT3G07610 IBM1 increase in bonsai methylation... Potri.005G091200
[exp]
51.38 0.6390
AT5G65070 MADS FCL4, MAF4, AGL... MADS AFFECTING FLOWERING 4, AG... Potri.003G169700
[exp]
56.14 0.6252
AT5G04240 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger... Potri.008G037800
[exp]
57.62 0.5963
AT1G27170 transmembrane receptors;ATP bi... Potri.015G043501
[exp]
64.66 0.6250
AT3G17850 Protein kinase superfamily pro... Potri.015G035600
[exp]
75.24 0.6230

Potri.004G153300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.