Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 367 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 344 / 2e-98 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G46730 231 / 8e-63 NB-ARC domain-containing disease resistance protein (.1) AT3G50950 231 / 1e-62 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G59218 224 / 1e-59 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 224 / 1e-59 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G46530 221 / 1e-59 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G07040 217 / 6e-58 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 208 / 4e-55 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 205 / 4e-54 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002900 [exp] 1980 / 0 AT3G14470 397 / 2e-119 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003200 [exp] 1929 / 0 AT3G14470 352 / 4e-103 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003832 [exp] 1891 / 0 AT3G14470 370 / 1e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003600 [exp] 1833 / 0 AT3G14470 388 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 1757 / 0 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 1729 / 0 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 1710 / 0 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170700 [exp] 1709 / 0 AT3G14470 409 / 3e-124 NB-ARC domain-containing disease resistance protein (.1) Potri.004G169800 [exp] 1567 / 0 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 469 / 5e-145 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 470 / 6e-144 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 450 / 9e-138 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 449 / 1e-135 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 446 / 2e-134 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 437 / 3e-130 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 424 / 4e-127 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 412 / 3e-123 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 410 / 6e-122 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 406 / 2e-121 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G170232.2 pacid=42795080 polypeptide=Potri.004G170232.2.p locus=Potri.004G170232 ID=Potri.004G170232.2.v4.1 annot-version=v4.1 ATGGAGGCTTTTCTTACGTTTCCCATGGAGGTGACTTTGACAAGGGTCAGTTCCATAGCTGCTGAAGGGATCAGACTTGCCTGGGGATTGGAGGGACAGC TGCAAAAGCTCGAAGAGTCCTTGACCATGATCAAAGCTGTGCTCAAAGATGCAGCCAGAAGGCCCGTAACAGACGATTTTGCGAAGCTTTGGCTGGAGAA GCTACAAGATGTAGCTTACGATGCTGAAGATGTTCTAGACGAGTTTGCTTATGAGAATCTCCGAAAAGACCAAAAGAAGAGAAACGTACGTAACTTTTTT TCATCCCACAACCCTACCAAATTCCGTTGGAATATGGGTCAAAAAGTTCAGAAGATCAATGAAGCCCTGGATGATATTCAGAAACTTGCAACTCGCTTTG GGTCTGGGCTGGGAGTTGCATCTCAACATGTAGAGAGTGGTCCTGAAGTTATCCGGGCTAAAGACCGAAAGACAGATTCCTTGCTTGGAAGCTCAGAAGT TGTAGTAGGAAGGGAGGATGATGTCTCTAAAGTTATGAAATTGCTGATTGGCTCGATTGATCAACAAGTTCTGTCTGTTGTCCCTATAGTGGGGATGGGT GGCCTCGGAAAGACTACTATAGCAAAAAAAGTTTATAAAGTAGCGAGGGAGAAAAAGCTTTTTGATGTAACAATATGGGTTTGTGTTTCTAATGAATTTA GTAAACAGAGGATTTTAGGAGAGATGTTGCAAGGTGTTGGTGGACCTATGTTGAGCAATCTAAATGAAATTATGGAAAGACTTAAAGAAAAGCTGGAAAA GAAGACATTTTTTCTTGTACTTGATGATGTGTGGGAAGGCCATGATAAGTGGAATGATTTGAAGGAGCAACTGTTAAAAATCAACAATAAGAAGGGGAAT GCTGTTGTTGTAACAACGCGTATTAAGGAAGTAGCGGACACGATGGAGACTTCTCCAGGGATTCAGCACGAGCCAGGGAGACTTTCAGATGATCAATGTT GGTCCATTATCAAGCAAGAGGTGAGCAGGGGTGGACGAGAAACAATAGCTTCAGACTTGGAGTCTATTGGAAAAGATATTGCAAAGAAATGTGGAGGGAT TCCATTACTTGCTAAAGTTTTGGGAGGAACTCTTCACGGAAAGCAGGTACAGGAGTGGCAGTCAATTCTAAACAGTAGAATTTGGGATTCTCAGGATGGA AATAAAGTTTTGCTCATATTGAGACTCAGTTTTGATCACCTGTCATCGCCATCACTGAAAACATGTTTTGCATACTGTTCCATTTTCCCTAAAGATTTTA AAATTGAAAGGGAAGAGCTGGTTCAACTTTGGATGGCCGAAGGTTTTCTTGGGACATCAAATGGGAGGACGGAAGACGAAGGCAACAAGTGTTTCAATGA CTTGCTTGCAAATTCCTTTTTCCAAGATGTTGAAAGGAATGAGTGTGAGATCGTCACAAGTTGCAAGATGCATGACCTTCTGCATGATCTTGCATTGCAG GTCTCAAAATCAAAAGTGTTAAATCTAGAGGCAGATTCGGCTGTTGATGGCGCATCTCATATTCGTCATCTAAATCTCATATCTTGTGGGGATGTTGAGG CAGCATTTCCAAGGGGTGATGCTAGAAAATTGCGAACTGTTTTCTCAATGGTTGATGTATTCAATGGGTCTTTGAAATTCAAAAGCTTGAGAACTCTCAA ATTGCAACGGTCTAATATCACAGAGTTACCAGATTCAATTTGGAAGCTGAGACATTTGAGATACCTTGATGTCTCACGTACCAGTATCAGAGTATTGCCA GAATCCATCACAAAGCTCTACCATTTGCAAACATTAAGATTCACTGATTGCAAGTCACTAGAAAAGCTTCCCAAGAAAATGAGAAATTTAGTCAGCTTGA GACATCTCCATTTTGATGATCCAAAGCTAGTGCCAGCTGAGGTGAGACTCTTAACACGCCTTCAAACTCTACCTTTATTTGTTGTGGGTCCAGATCATAT GGTTGAAGAGCTGGGATGTTTGAATGAACTAAGAGGAGCATTGGAGATATGCAAGCTTGAGCAAGTGAGAGACAAAGAAGAAGCTGAGAAGGCAAAACTG CGTGGAAAAAGAATTAACAAATTGGTGTTTGAATGGAGTTATGATGAAGGTAACAACAGTGTCAATAGCGAGGATGTGCTGGAAGGCCTGCAGCCTCACC CAGACTTAAGAAGCTTGACAATTGAGGGTTATGGAGGTGGATATTTCTCATCATGGATATTGCAACTCAATAATCTGACGGTGCTGAGATTGAATGGCTG CAGCAAGTTGAGGCAACTCCCAACACTTGGATGTCTTCCTCGCCTTAAGATTCTAAAGATGAGTGGAATGCCTAATGTGAAATGTATAGGCAAGGAGTTC TATAGTAGCAGCATTGGCAGTGCAGCAGAACTGTTTCCAGCACTAGAAGAACTCACTTTGCGGGGTATGGATGGTCTTGAAGAATGGATGGTACCAGGTG GAGAAGGTGATCTAGTATTTCCTTGTCTTGAAGAGTTGTGCATTGAGGAGTGTCGCCAGTTGAGGCAACTCCCAACACTTGGATGTCTTCCTCGCCTTAA GATTCTAAAGATGAGTGGAATGCCTAATGTGAAATGTATAGGCAAGGAGTTCTATAGTAGCAGCATTGGCAGTGCAGCAGAACTGTTTCCAGCACTAGAA GAACTCACTTTGCGGGGTATGGATGGTCTTGAAGAATGGATGGTACCAGGTGGAGAAGTTGTTGCAGTATTTCCTCGTCTTGAAAAGTTGAGCATTTGGC AGTGTGGAAAGTTGGAAAGCATTCCGAGATGTCGTCTTTCATCTCTTGTAGAATTTGAAATTCACGGATGTGATGAGCTGAGATATTTTTCTGGTGAGTT TGATGGCTTCAAGTCTCTTCAGATTTTAAGGATATTGAAGTGTCCAATGCTGGCATCCATTCCAAGCGTACAACACTGCACAGCTCTGGTGCAATTGCGT ATATACGACTGCCGTGAGTTGATCTCAATTCCTGGTGATTTTCGAGAATTGAAATATTCTTTGAAGACATTGAGTGTTAATGGGTGTAAATTGGGAGCTC TTCCAAGCGGACTACAATGTTGCGCATCTCTAGAGGAATTAACAGTAATTGATTGTAGTGAGCTTATCCATTTCAGTGGTTTACAAGAATTGTCTTCGCT ACGAAGTTTAGGGATTATACGTTGTGATAAGCTCATCAGTATTGATTGGCATGGTTTACGACAATTGTCTTCTCTTGTTTATTTACAAATCATCACGTGT CCCAGTTTGAGAGATATCCCAGAGGATGATTGCTTAGGCGGCCTCATGCAACTGCATTATTTGAGCATCGGTGGTTTCTCAAAGGAGATGGAGGCTTTTC CTGCAGGAGTTTTAAACTCATTCCAACACCTCAACTTGAGTGGGTCCCTCAAATACCTAATGATTGATGGATGGGATAAACTGAAGAGTGTACCACACCA ACTTCAACACCTCACTGCCCTCGAGAGATTGAAAATACGTTATTTCAATGGAGAGGAGTTTGAGGAAGCATTGCCAGAATGGTTGGCCAACCTTTCTTCT CTTCAATGTCTTTCGATCGAGGATTGCAAGAATCTCAAGTATATGCCAAGTTCAACAGCCGCCATTCAACGCCTCTCCAAATTAGAGCTATTGTATATCT GGTACTGTCCACATCTATCAGAAAATTGCAGAGAGGAGAATGGCTCTGAGTGGCCCAAGATCTCTCATATCCCAAAAATCTATATAAGATAG
AA sequence Show only first row Show all	>Potri.004G170232.2 pacid=42795080 polypeptide=Potri.004G170232.2.p locus=Potri.004G170232 ID=Potri.004G170232.2.v4.1 annot-version=v4.1 MEAFLTFPMEVTLTRVSSIAAEGIRLAWGLEGQLQKLEESLTMIKAVLKDAARRPVTDDFAKLWLEKLQDVAYDAEDVLDEFAYENLRKDQKKRNVRNFF SSHNPTKFRWNMGQKVQKINEALDDIQKLATRFGSGLGVASQHVESGPEVIRAKDRKTDSLLGSSEVVVGREDDVSKVMKLLIGSIDQQVLSVVPIVGMG GLGKTTIAKKVYKVAREKKLFDVTIWVCVSNEFSKQRILGEMLQGVGGPMLSNLNEIMERLKEKLEKKTFFLVLDDVWEGHDKWNDLKEQLLKINNKKGN AVVVTTRIKEVADTMETSPGIQHEPGRLSDDQCWSIIKQEVSRGGRETIASDLESIGKDIAKKCGGIPLLAKVLGGTLHGKQVQEWQSILNSRIWDSQDG NKVLLILRLSFDHLSSPSLKTCFAYCSIFPKDFKIEREELVQLWMAEGFLGTSNGRTEDEGNKCFNDLLANSFFQDVERNECEIVTSCKMHDLLHDLALQ VSKSKVLNLEADSAVDGASHIRHLNLISCGDVEAAFPRGDARKLRTVFSMVDVFNGSLKFKSLRTLKLQRSNITELPDSIWKLRHLRYLDVSRTSIRVLP ESITKLYHLQTLRFTDCKSLEKLPKKMRNLVSLRHLHFDDPKLVPAEVRLLTRLQTLPLFVVGPDHMVEELGCLNELRGALEICKLEQVRDKEEAEKAKL RGKRINKLVFEWSYDEGNNSVNSEDVLEGLQPHPDLRSLTIEGYGGGYFSSWILQLNNLTVLRLNGCSKLRQLPTLGCLPRLKILKMSGMPNVKCIGKEF YSSSIGSAAELFPALEELTLRGMDGLEEWMVPGGEGDLVFPCLEELCIEECRQLRQLPTLGCLPRLKILKMSGMPNVKCIGKEFYSSSIGSAAELFPALE ELTLRGMDGLEEWMVPGGEVVAVFPRLEKLSIWQCGKLESIPRCRLSSLVEFEIHGCDELRYFSGEFDGFKSLQILRILKCPMLASIPSVQHCTALVQLR IYDCRELISIPGDFRELKYSLKTLSVNGCKLGALPSGLQCCASLEELTVIDCSELIHFSGLQELSSLRSLGIIRCDKLISIDWHGLRQLSSLVYLQIITC PSLRDIPEDDCLGGLMQLHYLSIGGFSKEMEAFPAGVLNSFQHLNLSGSLKYLMIDGWDKLKSVPHQLQHLTALERLKIRYFNGEEFEEALPEWLANLSS LQCLSIEDCKNLKYMPSSTAAIQRLSKLELLYIWYCPHLSENCREENGSEWPKISHIPKIYIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170232 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Potri.014G005400 [exp]	3.87	0.8951
AT3G14470			NB-ARC domain-containing disea...		Potri.014G005600 [exp]	4.00	0.8917
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170700 [exp]	4.24	0.8775
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.018G020200 [exp]	4.24	0.8679
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015700 [exp]	5.65	0.8687
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Potri.016G059150 [exp]	7.21	0.8450
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015900 [exp]	8.12	0.8572
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009400 [exp]	10.39	0.8309
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145578 [exp]	10.90	0.8314
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003200 [exp]	11.83	0.8425

Compare expression of checked genes

Potri.004G170232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.