Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76160 880 / 0 SKS5 SKU5 similar 5 (.1) AT1G41830 843 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21850 797 / 0 SKS8 SKU5 similar 8 (.1) AT1G21860 795 / 0 SKS7 SKU5 similar 7 (.1) AT4G22010 785 / 0 SKS4 SKU5 similar 4 (.1) AT4G38420 783 / 0 SKS9 SKU5 similar 9 (.1) AT4G28090 701 / 0 SKS10 SKU5 similar 10 (.1) AT5G66920 627 / 0 SKS17 SKU5 similar 17 (.1) AT3G13400 601 / 0 SKS13 SKU5 similar 13 (.1) AT1G55570 596 / 0 SKS12 SKU5 similar 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013700 [exp] 874 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 872 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 823 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 817 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.014G154500 [exp] 809 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.007G038300 [exp] 668 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.001G000500 [exp] 612 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.007G038200 [exp] 603 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1) Potri.003G224100 [exp] 599 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005649 [exp] 854 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10034560 [exp] 842 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1) Lus10021238 [exp] 838 / 0 AT1G76160 892 / 0.0 SKU5 similar 5 (.1) Lus10021832 [exp] 802 / 0 AT1G76160 865 / 0.0 SKU5 similar 5 (.1) Lus10035282 [exp] 799 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10030045 [exp] 796 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10020022 [exp] 788 / 0 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10015545 [exp] 787 / 0 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10022648 [exp] 741 / 0 AT1G21850 729 / 0.0 SKU5 similar 8 (.1) Lus10023977 [exp] 733 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.004G180500.1 pacid=42794208 polypeptide=Potri.004G180500.1.p locus=Potri.004G180500 ID=Potri.004G180500.1.v4.1 annot-version=v4.1 ATGGGTTGTGGTGCAACATGTTGGCAAGTTCTTGTTTGTGTTACATTTTGTTGTACATTGGTTTTTGTTAATGCCGAGGATCCTTACAGGTTCTTCACCT GGAATGTTACCTACGGTGACATATATCCACTTGGTGTAAAACAACAGGGGATTCTGATAAATGGACAATTTCCAGGGCCGGATATCTATTCCGTCACCAA CAATAATCTCATCATCAATGTTTACAATAGCTTGCCGGAGCCATTTCTCATTTCTTGGAATGGTGTCCAGCAAAGGAGAAATTCATACGAAGATGGAGTA TATGGAACGACATGTCCAATCCCTCCGGGCAAGAACTTCACTTACATTTTACAAGTGAAAGATCAGATTGGCAGCTTCTACTACTACCCATCTCTTGCTT TCCATAAGGCAGCTGGTGGGTTTGGAGGCATCAGGATCCTTAGCAGGCCGCTAATTCCTGTCCCATTCCCTGAACCTGCTGATGATTTTACTGTTCTTAT TGGAGATTGGTACAAGGCCAACCACACGGCATTGAAGGCCATTTTAGATCGTGGTCACAAGCTTCCTCTCCCAGATGGCATCCTGGTCAATGGCCGTGGA CCCAATCAGACATATTTCACATTTCAACCTGGAAAAACTTACAGGCTCAGGATATCAAATGTGGGGCTCCAACATTCTCTCAATTTTCGCATTCAAGGCC ACAAGATGAAGCTAGTTGAAGTTGAGGGCACTCACACTCTTCAGACTACGTATTCATCACTGGATGTCCATGTCGGTCAATCCTATTCGGTGTTGGTCAC AGCTGATCAGACAGCTCAGGACTATTACATTGCTGTCTCTACTCGTTTCACCACCAAGATCCTTACCACCACTGCCATACTTCACTACAGCAATTCTGCC AAAAAAGTGTCCGGTCCAATCCCTGGTGGACCAACCACCGAAATCGACTGGTCTCTTAACCAGGCTCGTTCAATTAGGACAAATCTGACAGCAAGTGGAC CAAGACCAAATCCACAAGGATCATATCACTATGGAATGATTAACCTTACCAGAACCATCAAGCTAGAAAGCTCTGCAGCTCAAGTTAATGGCAAGCAGAG ATATGCAGTTAACAGCGTCTCATTTGTTCCTGCCGACACCCCTCTTAAGATTGCTGACTACTTTAAGATCGGGGGTGTTTTCCGCGTCGGAAGCATGCCA GACTATCCAACCGGCAAGAAAATGTACCTCGACACATCTGTCATGGGTGCCGATTTCAGGGCCTTTGTTGAGATCGTGTTTCAGAACCATGAGAACATTG TCCAGAGCTGGCACATCAATGGATACTCCTTCTGGGTAGTCGGTATGGATGGAGGGGTGTGGACTCCAGCTAGCCGTAATCAATACAATCTCAGGGATGC GGTTTCGCGCTGCACGACTCAGGTGTATCCCAAGTCATGGACTGCTATCTACATTGCACTTGATAATGTTGGAATGTGGAACATCAGGACTGAATTCTGG GCAAGACAATACCTTGGTCAGCAATTTTATATGCGTGTTTACTCACCGGTTGAGTCACCTCGAGATGAATATCCAATTCCCAAGAACGCCCTTCTTTGCG GGAGAGCCATTGGCAGAAGAACCAGACCTCTATAG
AA sequence Show only first row Show all	>Potri.004G180500.1 pacid=42794208 polypeptide=Potri.004G180500.1.p locus=Potri.004G180500 ID=Potri.004G180500.1.v4.1 annot-version=v4.1 MGCGATCWQVLVCVTFCCTLVFVNAEDPYRFFTWNVTYGDIYPLGVKQQGILINGQFPGPDIYSVTNNNLIINVYNSLPEPFLISWNGVQQRRNSYEDGV YGTTCPIPPGKNFTYILQVKDQIGSFYYYPSLAFHKAAGGFGGIRILSRPLIPVPFPEPADDFTVLIGDWYKANHTALKAILDRGHKLPLPDGILVNGRG PNQTYFTFQPGKTYRLRISNVGLQHSLNFRIQGHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQTAQDYYIAVSTRFTTKILTTTAILHYSNSA KKVSGPIPGGPTTEIDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINLTRTIKLESSAAQVNGKQRYAVNSVSFVPADTPLKIADYFKIGGVFRVGSMP DYPTGKKMYLDTSVMGADFRAFVEIVFQNHENIVQSWHINGYSFWVVGMDGGVWTPASRNQYNLRDAVSRCTTQVYPKSWTAIYIALDNVGMWNIRTEFW ARQYLGQQFYMRVYSPVESPRDEYPIPKNALLCGRAIGRRTRPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.004G180500 [exp]	0	1
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.012G126400 [exp]	2.44	0.6376	Pt-SKS1.2
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	10.19	0.6571	ATSEB1.1
AT4G35070			SBP (S-ribonuclease binding pr...		Potri.004G175500 [exp]	13.85	0.6404
AT1G13680			PLC-like phosphodiesterases su...		Potri.017G098900 [exp]	20.78	0.6335
AT5G46910			Transcription factor jumonji (...		Potri.003G096100 [exp]	22.13	0.6262
AT1G47380			Protein phosphatase 2C family ...		Potri.002G127300 [exp]	29.73	0.5791
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	33.04	0.6074
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Potri.002G107300 [exp]	59.48	0.5607
AT5G38700			unknown protein		Potri.002G198800 [exp]	60.99	0.5756
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.005G247700 [exp]	62.34	0.5856

Compare expression of checked genes

Potri.004G180500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.