Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) AT4G35180 379 / 3e-128 LHT7 LYS/HIS transporter 7 (.1) AT5G40780 218 / 4e-66 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G61270 216 / 2e-65 Transmembrane amino acid transporter family protein (.1) AT3G01760 210 / 4e-63 Transmembrane amino acid transporter family protein (.1) AT1G24400 207 / 8e-62 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G48640 199 / 9e-59 Transmembrane amino acid transporter family protein (.1) AT1G67640 196 / 6e-58 Transmembrane amino acid transporter family protein (.1) AT1G25530 187 / 2e-54 Transmembrane amino acid transporter family protein (.1) AT1G71680 159 / 9e-44 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G181100 [exp] 640 / 0 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 492 / 1e-171 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 417 / 1e-142 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 406 / 3e-138 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 405 / 9e-138 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.010G055800 [exp] 213 / 5e-64 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335300 [exp] 211 / 3e-63 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 209 / 1e-62 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.001G335200 [exp] 204 / 2e-60 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003339 [exp] 471 / 7e-164 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 470 / 1e-163 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10003338 [exp] 431 / 2e-147 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 418 / 2e-142 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 416 / 7e-142 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032751 [exp] 414 / 5e-141 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 412 / 1e-140 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 379 / 5e-128 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10022641 [exp] 253 / 7e-81 AT1G47670 302 / 4e-99 Transmembrane amino acid transporter family protein (.1) Lus10041581 [exp] 218 / 6e-66 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.004G181000.1 pacid=42796108 polypeptide=Potri.004G181000.1.p locus=Potri.004G181000 ID=Potri.004G181000.1.v4.1 annot-version=v4.1 ATGCCTCTTACAGAATCGAGAAATGGCAATGTCGCTACTGCAGTGTTCCATTTGTTATCTTCAGGAATCGGAATCCAGGCCCTTCTACTTCCAGTAGCTT TCGCCACTCTCGGATGGGTATGGGGGGCAATAAGCTTGTCCCTAGCATTTACATGGCAGCTCTACACCATATGGACTCTTGTTCAACTGCACGAACCAAT TCCTGGAATTAGAACTCGCTACAGCAGATATTTACAGCTTGCTATAGCCGCCTTTGGTCCAAAGCTTGGAAAGTTGCTAGCAATATTTCCGGTAATGTAC CTCTCAGGGAGCACATGTATCATGCTGATTATAAAAGGAGCTGGAGTTATGGAGCTGCTCTTCAAGCTAATGTGTGAAGGTGGGGCTACATGCGATGCCA AGTCTTTGACCGGGGCAGAGTGGTTCCTGGTCTTCACTTGCATGGCTATAGCATTGGCTCAGCGACCTAACTTGAATTCCATTGCTGGGTTCTCACTAGT TGGTGCCATGAGTGCCATTGGGTATTGTACTCTGATTTGGGCACTGCCCATTTCCAAGGACAGGCCCAGTGGCGTGTCTTATGACTCACGCAAGGGGGGA TCTACCATGGCTGGAATGTTTGATGTCTTGAATGCAATTGGTATAATTGTGCTTGCTTTCAGGGGTCATAATCTTGTGCTTGAGATTCAGGGAACATTGC CTTCAAGCTTAACAAATCCATCCAAAAGGACGATGTGGAGAGGGGTGAGTGTCTCGTACATCATAATAGCCATGTGTCAGTTTCCTCTAGCAATAGCTGG ATTTTGGGCTTATGGAAACAAGATACCTTCGAATGGAGGGATGTTGACTGCATTTATGCAGTTCCATGGACACGACACATCAAGATTTGCGAAGGGCCTT GTATACTTGCTAGTAGTGATTAACTGCCTTAGTTCATTCCAAATCTACGCCATGCCAGTTTTCGACAACCTGGAATTTAGGTACATTAGCATGAAGAACA GGCGATGCCCATGGTGGGTTCGCATTGGTTTTCGGCTCTTCTTCGGAGGATTGGCCTTCTTCATAGCTGTGGCTCTTCCTTTTCTGCCAAGCCTAGCTCC TTTAGTTGGAGGGATCACCTTACCCTTAACACTGGCTTATCCATGTTTCATGTGGATCTTGATTAAGAAACCCCATCAAAAAGGTCACGATGCCTTGTGG TGTCTTAATCTAGGACTTGGATGCTTAGGCATTGTTCTAAGTGTTCTATTGGTAGTTGCCGCAGCATGGAATTTGGCTATCAAAGGCCTACATGCCAGCT TCTTCAAACCCCTATGA
AA sequence Show only first row Show all	>Potri.004G181000.1 pacid=42796108 polypeptide=Potri.004G181000.1.p locus=Potri.004G181000 ID=Potri.004G181000.1.v4.1 annot-version=v4.1 MPLTESRNGNVATAVFHLLSSGIGIQALLLPVAFATLGWVWGAISLSLAFTWQLYTIWTLVQLHEPIPGIRTRYSRYLQLAIAAFGPKLGKLLAIFPVMY LSGSTCIMLIIKGAGVMELLFKLMCEGGATCDAKSLTGAEWFLVFTCMAIALAQRPNLNSIAGFSLVGAMSAIGYCTLIWALPISKDRPSGVSYDSRKGG STMAGMFDVLNAIGIIVLAFRGHNLVLEIQGTLPSSLTNPSKRTMWRGVSVSYIIIAMCQFPLAIAGFWAYGNKIPSNGGMLTAFMQFHGHDTSRFAKGL VYLLVVINCLSSFQIYAMPVFDNLEFRYISMKNRRCPWWVRIGFRLFFGGLAFFIAVALPFLPSLAPLVGGITLPLTLAYPCFMWILIKKPHQKGHDALW CLNLGLGCLGIVLSVLLVVAAAWNLAIKGLHASFFKPL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47670			Transmembrane amino acid trans...		Potri.004G181000 [exp]	0	1
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.014G106700 [exp]	3.46	0.9937
AT4G37280			MRG family protein (.1)		Potri.002G122500 [exp]	4.24	0.9937
					Potri.006G076350 [exp]	4.89	0.9937
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Potri.010G142300 [exp]	6.63	0.8062
					Potri.010G120401 [exp]	7.93	0.9651
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Potri.009G145100 [exp]	8.77	0.9401
					Potri.003G010664 [exp]	12.00	0.9251
AT5G50140			Ankyrin repeat family protein ...		Potri.001G187600 [exp]	17.83	0.6114
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Potri.002G006700 [exp]	18.46	0.8443
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252104 [exp]	20.14	0.7609

Compare expression of checked genes

Potri.004G181000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.