Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrLHT8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) AT4G35180 331 / 4e-108 LHT7 LYS/HIS transporter 7 (.1) AT1G24400 268 / 2e-84 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT5G40780 248 / 2e-76 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G67640 246 / 5e-76 Transmembrane amino acid transporter family protein (.1) AT1G61270 236 / 4e-72 Transmembrane amino acid transporter family protein (.1) AT3G01760 236 / 5e-72 Transmembrane amino acid transporter family protein (.1) AT1G25530 235 / 1e-71 Transmembrane amino acid transporter family protein (.1) AT1G48640 227 / 2e-68 Transmembrane amino acid transporter family protein (.1) AT1G71680 207 / 4e-61 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140800 [exp] 884 / 0 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 548 / 0 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 508 / 1e-176 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181100 [exp] 442 / 3e-151 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 428 / 9e-147 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 263 / 3e-82 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 251 / 9e-78 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 248 / 7e-77 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G179000 [exp] 242 / 2e-74 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003338 [exp] 614 / 0 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 613 / 0 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 613 / 0 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032751 [exp] 515 / 2e-179 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 513 / 1e-178 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 420 / 2e-142 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10003339 [exp] 390 / 4e-131 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 384 / 8e-129 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10022641 [exp] 317 / 9e-105 AT1G47670 302 / 4e-99 Transmembrane amino acid transporter family protein (.1) Lus10022329 [exp] 273 / 4e-86 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.004G181200.1 pacid=42795215 polypeptide=Potri.004G181200.1.p locus=Potri.004G181200 ID=Potri.004G181200.1.v4.1 annot-version=v4.1 ATGGGTGAAGTTGTTGATGCAAACTCTACTCCTGTGACACCAAGACCAGCCTCAGTGGCACCAACGCCACCGATATCAGCTCCTCCGTCGCAATTTCATT CACCGTCGTTGTCTAGATCACCTTTGCTCACACCTGATCATATTGTTCCAAGCAAAACCCCCAAAAACTCAACCCCAAGAAATGCAACCCCAAGAAATAG AACACCTCGCTTTATTACCCCTATAGGTAGTCCTATTAGAAGGGCTCTCAAGCTCACTAGACTAGACCCTGAAGATGCTTGGCTTCCTATCACCGAGTCC CGAAATGGAAACGCGTGGTATGCAGCGTTTCATTGCCTTTGCTCAGGAATTGGTTTTCAAGCACTTGTGCTCCCTGTCGCCTTCACTGTCCTTGGCTGGG CATGGGGGATCATAGCCTTGACTGTTGCTTTCGCATGGCAGCTTTACACCCTTTATTTACTTGTGCAACTCCATGAAAACACTGAAACTGGCGTTCGCTA CAGCAGATATCTTCAAATTATGAGTGCAAATTTCGGTGAGAAGAAAGCAAAGTGGCTGGGCCTGTTCCCAATATTGTACCTATCAATAGGCACATGTGTG GCTCTAAACATAATTGGAGGATCAACATCAAAATTATTTTTCCAGACTGTATGCGGTCAATCATGCACAGTCAAAACATTAACACCAGTGGAATGGTACC TGGTGTTTGCTAGTGCTGCAGTTCTTCTGTCTCAGCTGCCAAACTTGAACTCAATAGCTGGTGTCTCCCTAATCGGATCCATCACGGCTGTTATGTACTG CACAATTATGTGGATGGTTTCTGTTAACAAGGACAGGCTACCTGGAATTTCATACAAACCAGTTCGCGGACCAAAGGAGGTTGATAGGCTTTTTGAAGTT CTTAACGCACTTGGCATTGTTGCTTTTGCATTTAGAGGCCACAATCTTATACTTGAGATCCAGGCTACTATGCCTTCAAGTGAGAAGCATCCATCTCGTG TGCCAATGTGGAGGGGTGCCAAGGCTGCTTATACAGTTATTGCAGCATGTATATTCCCCCTTGCAATTGGAGGCTTCTGGGCATACGGTCAAAGGATACC AAAAAATGGTGGTTTGCAATCTGCCTTCTATGCATACCGAAGGAGAGACACCTCACAATTTATCATGGGACTCGTTAGTTTACTTATCATAGTAAATGCT CTTAGCTCATTCCAAATCTACGCCATGCCAATGTTTGATGAGTTAGAGTCAATTTTCACTAAGAGGATGAAGAGGCCATGCCAATGGTGGCTCCGAGTGA TTTTGAGGGCGTTCTTCGGGTATGGGGTCTTCTTTTTGGCCGTCGCAATCCCATCTATTGGAAGTGTAGGTGGTCTAGTCGGAGGAATATCACTGCCAGT CACATTGGCTTATCCATGCTTCATGTGGCTTAAGATGAGGAAACCGAACAAGTATAGCAAGATGTGGTACCTTAACTGGGGACTAGGAATCATTGGTTTG ATTCTTAGCGTGTGTTTGATGGCTGCTGGAGTATATGTTATCAAAGAGAATGATAATAAATTCCAGTGGTTCAAGCCTAAGTAA
AA sequence Show only first row Show all	>Potri.004G181200.1 pacid=42795215 polypeptide=Potri.004G181200.1.p locus=Potri.004G181200 ID=Potri.004G181200.1.v4.1 annot-version=v4.1 MGEVVDANSTPVTPRPASVAPTPPISAPPSQFHSPSLSRSPLLTPDHIVPSKTPKNSTPRNATPRNRTPRFITPIGSPIRRALKLTRLDPEDAWLPITES RNGNAWYAAFHCLCSGIGFQALVLPVAFTVLGWAWGIIALTVAFAWQLYTLYLLVQLHENTETGVRYSRYLQIMSANFGEKKAKWLGLFPILYLSIGTCV ALNIIGGSTSKLFFQTVCGQSCTVKTLTPVEWYLVFASAAVLLSQLPNLNSIAGVSLIGSITAVMYCTIMWMVSVNKDRLPGISYKPVRGPKEVDRLFEV LNALGIVAFAFRGHNLILEIQATMPSSEKHPSRVPMWRGAKAAYTVIAACIFPLAIGGFWAYGQRIPKNGGLQSAFYAYRRRDTSQFIMGLVSLLIIVNA LSSFQIYAMPMFDELESIFTKRMKRPCQWWLRVILRAFFGYGVFFLAVAIPSIGSVGGLVGGISLPVTLAYPCFMWLKMRKPNKYSKMWYLNWGLGIIGL ILSVCLMAAGVYVIKENDNKFQWFKPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47670			Transmembrane amino acid trans...		Potri.004G181200 [exp]	0	1	PtrLHT8
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032700 [exp]	6.78	0.8910
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032400 [exp]	6.78	0.8803
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032600 [exp]	10.39	0.8765
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.009G064700 [exp]	19.74	0.8275
AT3G23440		EDA6, MEE37	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G068800 [exp]	20.39	0.8589
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.016G137600 [exp]	21.44	0.8542	CYP71AN3
AT1G35710			Protein kinase family protein ...		Potri.014G195100 [exp]	21.90	0.8341
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G004900 [exp]	24.67	0.8367
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183200 [exp]	26.60	0.8380
AT5G35370			S-locus lectin protein kinase ...		Potri.019G013797 [exp]	33.67	0.8336

Compare expression of checked genes

Potri.004G181200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.