Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25490 123 / 4e-34 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25470 119 / 1e-32 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT5G52020 103 / 2e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51990 103 / 2e-26 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25480 103 / 3e-26 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT1G12610 102 / 3e-26 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT1G63030 100 / 2e-25 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G25810 100 / 3e-25 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 95 / 6e-23 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 92 / 6e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G147700 [exp] 369 / 3e-129 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.001G110700 [exp] 145 / 3e-42 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 140 / 2e-40 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.012G134100 [exp] 113 / 9e-30 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 105 / 4e-27 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.003G079300 [exp] 93 / 2e-22 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.018G043900 [exp] 93 / 4e-22 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.013G101100 [exp] 91 / 5e-22 AT1G71450 184 / 1e-59 Integrase-type DNA-binding superfamily protein (.1) Potri.014G099900 [exp] 91 / 6e-22 AT1G01250 191 / 4e-62 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027412 [exp] 125 / 1e-34 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10001871 [exp] 114 / 1e-30 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 114 / 2e-30 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10029602 [exp] 104 / 2e-27 AT1G12610 181 / 2e-58 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031657 [exp] 105 / 4e-27 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10029601 [exp] 105 / 6e-27 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006332 [exp] 105 / 8e-27 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10017829 [exp] 102 / 1e-26 AT1G63030 181 / 1e-58 DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10024491 [exp] 103 / 4e-26 AT4G25480 187 / 6e-60 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Lus10002801 [exp] 100 / 5e-25 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.004G187001.1 pacid=42795780 polypeptide=Potri.004G187001.1.p locus=Potri.004G187001 ID=Potri.004G187001.1.v4.1 annot-version=v4.1 ATGGAATTTGAGAATCACTCACCATCAATATCTTCATTGCGTCAAAATTTATCATGCAAGCCATGCAACAACCCTATTAATTATATTTATAATCTAAAGC AAGCACAAGAAAGGCCGGTTACAGTCTTGAAGAAGAAGAAAGCAGGAAGGAAGAAGTTCAAGGAGACTCGGCACCCGGTATATAGGGGGGTACGGAAGAG AAATGGGAATAAATGGGTATGTGAAGTGCGAGAACCGAACAAGAAATCAAGAATTTGGTTAGGGACCTTCACTAGCCCAGAAATGGCAGCTAGGGCACAT GACGTTGCTGCCTTAGCACTGAAGGGAGAAACTGCTACTTTAAATTTTCCTGATTCAGCTTTGATACTTCCTCGAGCGAAGTCGTCTTCTGCTGGAGATA TACGAAGAGCTGCGCGTGATGCTGTTGAGGCCTTTATACCTAGTGCTTCTTTGTGTTCTCCCCCCTCACCATCTCATCATAAGAACTTTTCATGCGTGAC AAGCTCAAGTAAAGTTTTGAGTCCAGCTTTAAGCGATCTCAATCCACATGAGAAGGGCATAGAAAATGTTTTCAAACCTTCATTAATTGGCATGCAAGGT GTTGAGGTATATGGAAAGAAGGCTCTTAATGATGACCCTTTTTCAATGGTCATGATGTCATGCCCTAACAATTGCTCGGAGAAGGTGTCCCATCAACCCA ATGCACTGTTCTTTGATGAGGAGGCATTGTTTAACATGCCAGGATTACTTGATAGCATGGCAGAGGGTTTGATCCTAACCCCACCAGTTATGCAAAGAGG ATTTAATTGGGATGACATGGCGTGTTCTACGGACTTGACATTATGGGAGGAGGACTAG
AA sequence Show only first row Show all	>Potri.004G187001.1 pacid=42795780 polypeptide=Potri.004G187001.1.p locus=Potri.004G187001 ID=Potri.004G187001.1.v4.1 annot-version=v4.1 MEFENHSPSISSLRQNLSCKPCNNPINYIYNLKQAQERPVTVLKKKKAGRKKFKETRHPVYRGVRKRNGNKWVCEVREPNKKSRIWLGTFTSPEMAARAH DVAALALKGETATLNFPDSALILPRAKSSSAGDIRRAARDAVEAFIPSASLCSPPSPSHHKNFSCVTSSSKVLSPALSDLNPHEKGIENVFKPSLIGMQG VEVYGKKALNDDPFSMVMMSCPNNCSEKVSHQPNALFFDEEALFNMPGLLDSMAEGLILTPPVMQRGFNWDDMACSTDLTLWEED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25490	AP2_ERF	DREB1B, CBF1, A...	DRE BINDING PROTEIN 1B, C-repe...		Potri.004G187001 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	10.14	0.8740	WRKY40.2
AT3G18360			VQ motif-containing protein (....		Potri.015G046600 [exp]	12.08	0.8737
AT3G29000			Calcium-binding EF-hand family...		Potri.008G087900 [exp]	13.96	0.8707
AT5G04010			F-box family protein (.1)		Potri.006G044801 [exp]	19.28	0.8633
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.001G102300 [exp]	19.28	0.8664
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.001G167700 [exp]	27.62	0.8606	LOX3.1
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226400 [exp]	30.46	0.8592
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.002G038500 [exp]	30.88	0.8589	Pt-GMMYB29.2
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046900 [exp]	33.22	0.8495	ERF11,Pt-EREBP1.3
					Potri.010G078950 [exp]	33.63	0.8516

Compare expression of checked genes

Potri.004G187001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.