Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27810 880 / 0 ATNAT12 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) AT4G38050 543 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 293 / 8e-91 Xanthine/uracil permease family protein (.1) AT2G05760 290 / 9e-90 Xanthine/uracil permease family protein (.1) AT1G60030 281 / 3e-86 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G62890 270 / 8e-82 Xanthine/uracil permease family protein (.1.2.3.4) AT5G49990 268 / 3e-81 Xanthine/uracil permease family protein (.1) AT1G10540 258 / 2e-77 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT2G26510 257 / 4e-77 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT1G49960 237 / 1e-69 Xanthine/uracil permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G148600 [exp] 1134 / 0 AT2G27810 900 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Potri.007G011400 [exp] 551 / 0 AT4G38050 834 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 295 / 1e-91 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 294 / 3e-91 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 293 / 1e-90 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.012G077400 [exp] 265 / 2e-80 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 265 / 4e-80 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.015G072600 [exp] 262 / 4e-79 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.014G035800 [exp] 262 / 9e-79 AT2G26510 734 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020551 [exp] 876 / 0 AT2G27810 891 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Lus10009401 [exp] 866 / 0 AT2G27810 888 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Lus10035946 [exp] 580 / 0 AT4G38050 825 / 0.0 Xanthine/uracil permease family protein (.1) Lus10025716 [exp] 580 / 0 AT4G38050 824 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 289 / 2e-89 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10030014 [exp] 284 / 2e-87 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10010707 [exp] 261 / 9e-79 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 260 / 3e-78 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 257 / 3e-77 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 258 / 6e-77 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00860 [poplar] [flax] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Potri.004G187900.2 pacid=42794532 polypeptide=Potri.004G187900.2.p locus=Potri.004G187900 ID=Potri.004G187900.2.v4.1 annot-version=v4.1 ATGTCTAACTCTGACCCGAAAGTCGGGCCCAAACCAGGTCAGTGGCCACCAGCACCAGAATCTGCAGCAATGCCGCCGTCTTCCTGGGCTAAACGAACTG GGTTTAGGCCCAAGTTTTCTGGTGAGACCAATGCGAGTGATTCTGGACAGATTTCACTCCCTCCGAGGCCGAAAGAGCAAAAGAATTCACAGCCGGATGT TGAAGCGGGTCGGGTCAGGGCAACACTACCACAACCCCCACCAGCGCCGCCTCCGGCTGCAGTGAATGGGACCGATAAGGCGGTGGTCGTGCCAGCAGAG AATAAGGATCAGACAGTGGTGAAGAGGAGGAGGGACTCTGATGGTGGTAGTGGTGGGGGAGCGAAGAAGGATGGTTTGGGTCATGGGGCAAATGGGGCGG GTCCGAATGGCGTGCCGGAGGGTCCGAGAAGAGCAGGGGTGAGGAATGAGGAAGTGATTGATGTGGAGGATGATGGATTTGTCAGAGGGAGACATACACA TATGAAGTACGAGTTAAGAGACACTCCTGGTCTTGTTCCCATCGGTCTATATGGTCTCCAGCATTACCTTTCAATTTTAGGTTCATTGATTCTCATTCCA CTTGTCATAGTTCCTGCAATGGGTGGCACTCATGAGGATACTTCAATGGTTGTGTCCACAGTGCTATTTGTTTCAGGAGTAACCACTCTTTTGCATACGT CATTTGGGTCAAGGTTGCCTTTGATACAGGGCCCATCATTTGTTTACCTTGCTCCAGCACTGGCAATAATCAATTCTCCTGAGTTTCAAGGACTAAATGG AAATAATTTCAAGCATATTATGAAAGAGCTACAAGGAGCTATAATTATAGCTTCAGCTTTTCAAACAATACTTGGATATAGTGGACTGATGTCAGTATTT TTGAGGTTGATCAATCCAGTGGTTGTTGCCCCAACTTTGGCTGCTGTTGGGCTTTCTTTTTATAGTTACGGCTTTCCACGAGTTGGTACCTGTCTTGAGA TTGGTGTAGTGCAGATATTACTGGTTATTATGTTTTCTCTTTACCTGCGCAAGATTTCTGTTTTTGGTCATCGCATATTTCTTATTTATGCAGTTCCATT GGGTCTAGCAATCACATGGGCGGCTGCTTTCCTTCTTACTGAAGCAGGGGTCTATAGTTACAAAGGTTGTGATGTAAATGTTCCAGCATCAAACATTATA TCCGACCACTGCAGAAAGCATGTTTCCAGCATGAAGCACTGCCGAGTTGATACTTCCTATGCGCTGAAATCATCCCCGTGGTTTAGGTTTCCTTATCCAT TACAATGGGGTACTCCTGTCTTTGAGTGGAAAATGGCTCTTGTTATGTGTGCAGTGTCCATCATCTCATCTGTAGATTCGGTTGGTTCATATCATGCATC TTCATTGTTGGCGGCATCTGGACCTCCAACCCCAGGGGTTGTTAGTCGGGGGATTGGTCTTGAAGGCCTCTGTAGTGTCTTGGCTGGTCTATGGGGTACC GGAACTGGTTCTACTACTTTAACTGAGAATGTGCACACTATTGCTGTGACTAAAATGGGCAGCCGCAGAGCAGTTGAATTAGGTGCATGTGCTTTGATCC TCTTATCCCTTATAGGTAAAGTTGGAGGATTTATCGCCTCAATTCCTGAAGTCATGGTTGCTGCTCTCCTTTGTTTCATGTGGGCAATGCTTTCAGCATT GGGATTATCAAACCTGCGATATAGTGAGGCTGGAAGCTCCCGGAATATCATCATAGTCGGTTTATCTTTGTTTTTCTCCCTGTCTGTACCAGCATACTTT CAGCAATATGGCATCTCTCCAAATACTAACTTGTCTGTCCCGAGTTATTTACATCCATACATTGTGGCCTCTCATGGGCCATTCCGCAGCAAATATGAAG GGTTGAACTATTTTTTGAACATGTTACTGTCCTTAAATATGGTGATTGCATTCCTTGTTGCTGTCATCCTGGACAACACTGTGCCTGGCAGTCAACAAGA GCGTGGGGTCTATGTATGGTCTGAAACTGAGGCAGCAAGGAGGGAGCCTGCCATTACAAAAGACTATGAATTGCCCTTCAGAGTTAGCCGGATTTTAAGA TGGGTAAAATGGGTTGGATTTTGA
AA sequence Show only first row Show all	>Potri.004G187900.2 pacid=42794532 polypeptide=Potri.004G187900.2.p locus=Potri.004G187900 ID=Potri.004G187900.2.v4.1 annot-version=v4.1 MSNSDPKVGPKPGQWPPAPESAAMPPSSWAKRTGFRPKFSGETNASDSGQISLPPRPKEQKNSQPDVEAGRVRATLPQPPPAPPPAAVNGTDKAVVVPAE NKDQTVVKRRRDSDGGSGGGAKKDGLGHGANGAGPNGVPEGPRRAGVRNEEVIDVEDDGFVRGRHTHMKYELRDTPGLVPIGLYGLQHYLSILGSLILIP LVIVPAMGGTHEDTSMVVSTVLFVSGVTTLLHTSFGSRLPLIQGPSFVYLAPALAIINSPEFQGLNGNNFKHIMKELQGAIIIASAFQTILGYSGLMSVF LRLINPVVVAPTLAAVGLSFYSYGFPRVGTCLEIGVVQILLVIMFSLYLRKISVFGHRIFLIYAVPLGLAITWAAAFLLTEAGVYSYKGCDVNVPASNII SDHCRKHVSSMKHCRVDTSYALKSSPWFRFPYPLQWGTPVFEWKMALVMCAVSIISSVDSVGSYHASSLLAASGPPTPGVVSRGIGLEGLCSVLAGLWGT GTGSTTLTENVHTIAVTKMGSRRAVELGACALILLSLIGKVGGFIASIPEVMVAALLCFMWAMLSALGLSNLRYSEAGSSRNIIIVGLSLFFSLSVPAYF QQYGISPNTNLSVPSYLHPYIVASHGPFRSKYEGLNYFLNMLLSLNMVIAFLVAVILDNTVPGSQQERGVYVWSETEAARREPAITKDYELPFRVSRILR WVKWVGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.004G187900 [exp]	0	1
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	8.71	0.7557
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.009G148600 [exp]	14.14	0.7429
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.013G082200 [exp]	15.13	0.7829	CESA3.1
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.004G195100 [exp]	63.07	0.7278
AT4G14310			Transducin/WD40 repeat-like su...		Potri.010G069200 [exp]	75.57	0.7336
AT5G20950			Glycosyl hydrolase family prot...		Potri.013G055600 [exp]	76.28	0.6596
AT3G23750			Leucine-rich repeat protein ki...		Potri.018G141000 [exp]	77.61	0.7293	Pt-RHG4.1
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	134.16	0.6758	ATSEB1.1
AT2G22610			Di-glucose binding protein wit...		Potri.002G110600 [exp]	150.59	0.6947
AT5G40080			Mitochondrial ribosomal protei...		Potri.005G161600 [exp]	182.23	0.6643

Compare expression of checked genes

Potri.004G187900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.