Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 647 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 487 / 1e-147 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 223 / 5e-60 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT5G35450 223 / 1e-59 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 222 / 3e-59 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 217 / 7e-58 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 213 / 3e-56 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G50180 209 / 1e-55 NB-ARC domain-containing disease resistance protein (.1) AT1G58848 207 / 3e-54 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 207 / 3e-54 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261300 [exp] 962 / 0 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261600 [exp] 900 / 0 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.004G194800 [exp] 845 / 0 AT3G14470 622 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 731 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 704 / 0 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015600 [exp] 700 / 0 AT3G14470 591 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015200 [exp] 698 / 0 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 684 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 680 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005321 [exp] 804 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 775 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 771 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 698 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 676 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 675 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 667 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 473 / 4e-144 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 417 / 5e-124 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 378 / 4e-109 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.004G196100.1 pacid=42794470 polypeptide=Potri.004G196100.1.p locus=Potri.004G196100 ID=Potri.004G196100.1.v4.1 annot-version=v4.1 ATGGCAATTGGTGAGATTTTTCTTGCTGCATTCCTTGGAATGCTGTTTACAAGATTGACATCTCCTGAGTTCTTGAAGTTTGCACGTCGAGAGGGCATTT GGAAGAAGGCAGAGAAGTGGAGAGGGATGTTATTGAAGGTCCAGGAGGTACTTGATGACGCGGAAGAAAAGCAGCTGACGGAAAAGGCTGTGAAGATATG GCTGGATGATCTAAGAGACTTGGCATATGATGTGGAGGACTTGCTTGATGAATTTGCTACTGAATCTTTACGAAGGGAGTTGATGGCAGCAGAAGAGGCT AGCACAAGCAAGGTACGGAGGATAGTGTCTACTACCTTATCATTTACCAAAATCAGTGCAAGTGCTATTAAGTTCAATCCCAAGATGAGGTCAAAGATGA AAGAGGTGAGTAGCCGGTTAGATGGAATGGCGAAGCAGAGAATTGAACTTGGTTTAGAAAAGATGAGTGGAGGTAGAAGGACATCAACTGATGTATGGCA GAAACCACCTAGTGCCTCTGTCCCAAATGAACCTGTCATCTATGGCAGGGATGGAGATAAGAAGAAGGTAATTGATTTGCTGTTGACAGAAGAGGCAAAT CACGGTGATACTAATTTTCATGTCGTTCCAATTGTCGGTATGGGTGGTATCGGCAAAACAACTCTTGCACAGCATGTGTTTCAGGATGAATTGGTCAAGG AATGGTTCAGTACAAAAGCATGGGCTTGTGTGTCGGATGACTTTGATGTTATGAGAATATCAAAGGCGATTCTCGAGTCAGTCACTCCGCATCCCTGTGA TTTCAAGGAGTACAATCAAGTTCAGGTCAAATTGAGGGAGGCGCTAGCCGGAAAGAAGTTTCTTCTTGTTTTAGATGATGTATGGAACAAGAATTATGGT CTCTGGGTAGCGTTGAAAACTCCCTTTGCAGCCGGAGCACCAGGAAGTAAGATAATTCTGACCACTCGTGATGCAGACGTTGCACTAATGGTTGGACCGA CTGAATACCATTGCCTAAAGCCACTATCAGACCAAGATTGCTGGTCTGTGTTTGTGAAGCATGCATTCGAAAATAGAGATCTCGGCGCACAAACAAACCT CCAATCAGTTTGTGAGAGAATCGTTACCAAGTGTAAGGGTTTGCCTTTGGCAGCCAGAACTCTTGGTGGCCTCTTACGCACTAAGCAAAGGGAGGATGAG TGGGAAGACATACTGAATAGTAAGATATGGGACTTGTCAGACTCCCAAAGTGACATTCTCCCTGTTTTAAGATTGAGCTACTACCATCTCCCTTCACATT TGAAGAGGTGTTTTACATATTCTGCTCTAATTCCGAAGGATTTTGAATTTGAAGAGAAGGATCTTGTCCTTCTATGGATGGCAGAAGGTTTGGTTCCACA ACAAGTACAGAACAAGCAAATGGAAGATATGGGTGCGGAGTATTTTCGTGATCTAGTGTCGAGGTCAATTTTTCAAGTAGCAAACTGTGATGAATCTCGA TTTGTGATGCATGATCTCGTGAGTGATCTGGCTCAGTGGGCTGCGGGAGACACATGTTTTCAATTGGGTAATGATTTGAATGCCATCAAGCAGTTCAAAG TATCCAAGAGAGCTCGCCACTCCTCCTATATCCGTGGCTGGGATGGTATCAGAAAGTTTGAAGTATTCCATACTACTAAACGTTTACGAACTTTCCTACC ACTGCCATCTCTTTTAGGTCATAATACAGGCTACTTAACTAGTCATGTCCCTTTTGATTTGTTGCCAGAATTAGAATTTCTGAGGGTGCTGTCTTTAAGT GGTTACTGCATTGATACGCTACCAAATTCAATTGGAGATCTGAAACATTTAAGGTTTCTTAATCTTTCCTTCTCGGCAATCAGAAATTTACCTCAATCAG TATGTTCTCTATACAACTTGCAGACTTTGTTACTGAAAGGATGTTGTCTTCTTGAAGGGCTGCCTTCAAAACTGGGGAGTCTCATCAACCTCCGGCATCT TGATATCACAAGTGCAAGTTCAATCAAAGCGATGCCAATGGGAATTGAAAAGCTGACAAATCTGCAGACACTTTCCAATTTTGTCCTGGGCAAAGATAAG GGCTCTAGGTTGAGTTCCTTGGTGAATTTGAAATCTCTTCGAGGAACGCTTTGTATTACAGGCTTGGAGAATGTGATTGATGCTCGGGAAGCAATGGAGG CCAACATAAAAGATATAAATAACCTTGAAGTTTTGTTGCTGGAATGGAGTCCCAGAACAGATAATTCACGAAATGAGAAGGTTGACAAAGATGTGCTCGA TGATCTTAGACCTCATGGAAAAGTCAAAGAACTCACCATCAACTGCTATGCTGGCCTAACATTTCCAACCTGGGTAGGAAATCCATCATTCTCCAGCATA TTTCTCCTAAGGTTAGAGAACTGTACAAAATGCACTTCCTTGCCACCTCTTGGACTGCTGCCTTCTTTAAAAAATCTCAGCATAGTAAGTTTAACTGCAG TAAAAAAAGTAGGTCCTGAATTTTATGGACAAGGTTGCTCAAAGCCTTTTCCAGTTTTAGAGACTTTACTTTTCAAGAACATGCAGGAATGGGAGGAATG GATTCCTTGTGGGCTTGGTTCTGACGAATTCCCTCTCTTGAATAAGCTGTCTGTTAAAAGCTGTCCCAATCTGTGCAAAAAATTACCTCCAAGTGTTCCA TCACTAGAAAAACTTGTGATTAAAAAATGCGAGAAGTTGGTGGTATTAATTCATAGTCTTCCAAAGCTGTGCAAAATGGTAATCAATGGCTGCAAAGAAG TGGTGTACGAAGGTGGCGTTTATCTCAGATCTCTCAACTCCATGACAATTTCCAACATTTCAAAGCTCACTTACCTAGCAGAAGGATTCATCCAACCATT GGCAGAAGTACAGGAATTGGAGATTGCTAATTGCATGGAATTGGCATCTTTGTACGAAAATGGAGTGGCATTGGCAAAACAGCTCACTTCCCTTCTTAAG TTGGAGGTTAGAAACTGTCCCCAAGTTGTTTCTTTGATGGAAGGAGAAGTACCTGTGTATATGCAACAGCAGCTGGCTAACTGCAAGCTTGAATCTTTGA CATTTAGTACATGTGAGAGCCTCAAGAAGTTACCACAATGGGTTCACAGCCTAGTGTCCCTTAAAGAGCTGAAAATTCAATACTGTCCGAGACTCCTTTC GTTTCCCGAGGCTGGTTTGCCCTCCACACTGAGAATCATTGAGATTGTTGGCTGCAACGCTTTAACCCCCTTACCTGCTGCAGTGACTTACAATATGATG TGTCTTGAGCAGTTGCGCATTGAAAATTGCGAGTCTTTAATATCCTTTGGAAGAATCCAGCTACCTCCAACTTTAAAAAAGTTGGAGATAAGATATTGCG AGAATCTGTTATGCTTACTGGATGATGGGGAGGGATCCTCGTCAAAGAAATCTGATGAGAATACCAGTTGCAGCGGGAACAACTCATCTCTTCTTGAGTA CTTGTATGTTGGAATATGCAACTCTCTCACTTCCATAGGTGAGTTACCTTCAGCTCTTAAGTACCTCCAGGTTTGTTCATGTTCAAAGCTCAAATCCTTA TCATCCAGAGACAAACTACCGGCAGGGCTTAAACACCTCGCTATTGACTCGTGTGAAAATTTGGAATCAATGCCGGACAGGTTTCAGGATAACATGTCCC TTGAAAATTTGAAAATATGGTTCTGCTTTAACCTTAGATCTTTGCCCGAAGGCCTACATAAATTATGCCATCTTCGTGAAATTTCAATATGGTACTGTCC AGCTCTTGTTTCCTTTGCCGCTGAGGGGTTGCCCATAAACCTAAGGAGGCTCTTCATCATCAAATGTGATGGACTCAAGGCTATCCCTGATCATATGCAC AATCTCATGTCTCTTGAAGAACTGTCAATTTACTACTGTCCAGACATTGTATCATTTCCAGAAGAGGGTTTTCCTACTAGCCTAACATATCTTGCTACCG TAGATCTTAAGATCTGTGAGCTACTGTTTAACTGGGGCATGCACAAACTCTCCGCTCTTAGAACCCTCATCATTCAAGGTGGATTCTCTCATATATCCTT TCCATCTGTGGACATGGGAGTGAGGTTGCCTTCTGCTCTAAACAGACTAAGCATTGAAGATTTTCCGAATCTTGAGTACCTATCCTACAGCGGCTTTCAA AATCTCTCCTCTCTTGAACGCCTAAGCATCAGTGACTGCCCCAAGCTCACATCATTTCCAGGGAAGGGCTTGCCTTCCTCACTTTTAGAACTACGTATTC GAGCATGTCCCCTTTTAGTACAACAGATAAAGGGAAGAGTAAAAGAATGGCTCAAGATAAGGCACATTCCATACATTAACATAGACGGAAAAGTAGTCTC TGACCCAGCCACCCAGTTATGA
AA sequence Show only first row Show all	>Potri.004G196100.1 pacid=42794470 polypeptide=Potri.004G196100.1.p locus=Potri.004G196100 ID=Potri.004G196100.1.v4.1 annot-version=v4.1 MAIGEIFLAAFLGMLFTRLTSPEFLKFARREGIWKKAEKWRGMLLKVQEVLDDAEEKQLTEKAVKIWLDDLRDLAYDVEDLLDEFATESLRRELMAAEEA STSKVRRIVSTTLSFTKISASAIKFNPKMRSKMKEVSSRLDGMAKQRIELGLEKMSGGRRTSTDVWQKPPSASVPNEPVIYGRDGDKKKVIDLLLTEEAN HGDTNFHVVPIVGMGGIGKTTLAQHVFQDELVKEWFSTKAWACVSDDFDVMRISKAILESVTPHPCDFKEYNQVQVKLREALAGKKFLLVLDDVWNKNYG LWVALKTPFAAGAPGSKIILTTRDADVALMVGPTEYHCLKPLSDQDCWSVFVKHAFENRDLGAQTNLQSVCERIVTKCKGLPLAARTLGGLLRTKQREDE WEDILNSKIWDLSDSQSDILPVLRLSYYHLPSHLKRCFTYSALIPKDFEFEEKDLVLLWMAEGLVPQQVQNKQMEDMGAEYFRDLVSRSIFQVANCDESR FVMHDLVSDLAQWAAGDTCFQLGNDLNAIKQFKVSKRARHSSYIRGWDGIRKFEVFHTTKRLRTFLPLPSLLGHNTGYLTSHVPFDLLPELEFLRVLSLS GYCIDTLPNSIGDLKHLRFLNLSFSAIRNLPQSVCSLYNLQTLLLKGCCLLEGLPSKLGSLINLRHLDITSASSIKAMPMGIEKLTNLQTLSNFVLGKDK GSRLSSLVNLKSLRGTLCITGLENVIDAREAMEANIKDINNLEVLLLEWSPRTDNSRNEKVDKDVLDDLRPHGKVKELTINCYAGLTFPTWVGNPSFSSI FLLRLENCTKCTSLPPLGLLPSLKNLSIVSLTAVKKVGPEFYGQGCSKPFPVLETLLFKNMQEWEEWIPCGLGSDEFPLLNKLSVKSCPNLCKKLPPSVP SLEKLVIKKCEKLVVLIHSLPKLCKMVINGCKEVVYEGGVYLRSLNSMTISNISKLTYLAEGFIQPLAEVQELEIANCMELASLYENGVALAKQLTSLLK LEVRNCPQVVSLMEGEVPVYMQQQLANCKLESLTFSTCESLKKLPQWVHSLVSLKELKIQYCPRLLSFPEAGLPSTLRIIEIVGCNALTPLPAAVTYNMM CLEQLRIENCESLISFGRIQLPPTLKKLEIRYCENLLCLLDDGEGSSSKKSDENTSCSGNNSSLLEYLYVGICNSLTSIGELPSALKYLQVCSCSKLKSL SSRDKLPAGLKHLAIDSCENLESMPDRFQDNMSLENLKIWFCFNLRSLPEGLHKLCHLREISIWYCPALVSFAAEGLPINLRRLFIIKCDGLKAIPDHMH NLMSLEELSIYYCPDIVSFPEEGFPTSLTYLATVDLKICELLFNWGMHKLSALRTLIIQGGFSHISFPSVDMGVRLPSALNRLSIEDFPNLEYLSYSGFQ NLSSLERLSISDCPKLTSFPGKGLPSSLLELRIRACPLLVQQIKGRVKEWLKIRHIPYINIDGKVVSDPATQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	0	1
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	3.00	0.9777
AT1G77160			Protein of unknown function (D...		Potri.005G188100 [exp]	5.47	0.9693
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	6.63	0.9758
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	7.14	0.9748
AT1G49570			Peroxidase superfamily protein...		Potri.005G135300 [exp]	9.05	0.9475	PRX1.8
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	9.48	0.9704
AT3G06880			Transducin/WD40 repeat-like su...		Potri.005G240100 [exp]	10.95	0.9662
AT1G52780			Protein of unknown function (D...		Potri.006G187000 [exp]	13.07	0.9596
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G185900 [exp]	13.96	0.9640
AT1G61050			alpha 1,4-glycosyltransferase ...		Potri.004G039300 [exp]	14.28	0.9655

Compare expression of checked genes

Potri.004G196100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.