Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 292 / 2e-83 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 275 / 2e-76 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 156 / 6e-39 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G46730 144 / 6e-35 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 130 / 1e-30 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 129 / 2e-30 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G50180 127 / 1e-29 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 127 / 1e-29 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 125 / 3e-29 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT5G43730 124 / 8e-29 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197900 [exp] 1048 / 0 AT3G14470 313 / 3e-91 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 853 / 0 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 847 / 0 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 842 / 0 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135800 [exp] 837 / 0 AT3G14470 403 / 3e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170400 [exp] 825 / 0 AT3G14470 401 / 3e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.004G169800 [exp] 823 / 0 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135700 [exp] 822 / 0 AT3G14470 380 / 2e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170700 [exp] 806 / 0 AT3G14470 409 / 3e-124 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 380 / 1e-114 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 355 / 3e-105 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 330 / 1e-95 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 322 / 1e-92 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 317 / 6e-91 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 305 / 3e-86 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 297 / 3e-84 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 293 / 2e-83 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 295 / 3e-83 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 285 / 3e-80 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.004G197800.2 pacid=42796031 polypeptide=Potri.004G197800.2.p locus=Potri.004G197800 ID=Potri.004G197800.2.v4.1 annot-version=v4.1 ATGATTTATAAGATTTTTAGACGGAAGGTAGAGATTCAAAACAGTCTGAAAAGGAAGGTGCGCAGCTTCTTGTCTCTCTCCAACCCAATAGCATTTCATC TGTGTGTGGCCTTAAAAGTTCAAAAGATCAAGGTGTCCTTAGACGAGCTTAGAAAAGATGCAATTGGGTATGGGCTTGGAGTTCTATATACAACTCCTCA ACCTAGCCTGCACCCAAAGACAGACTCTTTCCTTGGCAGCTCAGAAGTTGTCATAGGAAGGGTTGATGATGTCTCTAAAATTATGAACTTGATGGTTAGC TCTTGCAGACAACAAGTTCTTTCTGTCATTCCTATAGTGGGAATGGCCGGGCTCGGAAAGACCACCCTAGCCAAAATGGTGCTCAAAGAAGTAAAAGATA GAAAACTTTTTGATGTGATATTTTGGATCTGTGTTTCTGATAGTTTTGATGATGAAAGGATTTTAGGAGAAATGTTGCAAACTCTTGATAAAAACACTGG TGGGATAAGTAATATAAATACAATAATGACAAATCTTGAAAGACAGTTGAAGGATAAAAAATTTCTTCTCGTACTTGATGATGTGTGGAATGAAGAATAT GGGAAGTGGGAGAGTTTAAGGGATCGTCTGTTAAAAGTTGTTGGGATTAATCATGGTAATGCTGTTGTTGTGACGACTCGTCTTCCATTAGTAGCATCCA TAATGGAGAATCCTCCTGTGTTTAGGCATGAACTGAAACAACTGTCAAATGATGAATGTTGGTCAATTATTAGGAAAATTGTGTCTAGAAATGGAGGAGA GTCGATTCCTTCAGAATTGGAGGCTGTCGGAATCGATATTGCAAAAAAGTGTGGGGGAGTACCATTAGCTGCTAGTATTATAGGGGGAATGTTGCTTTCT GAGAAGAAGGAAAAATGGTTGTCCATAAAAAAAAATGAAGCTGTTGAGAAGTTTAATCTTACTAAAAAACTTTTACCAGTGTTGAAATTAAGTTTCGATC ACGTGTCTTCTGAATCTTTGCAACGATGTTTTGCTTATTGCTCTATTTTTCCGAAAGATTTTGAGATTGAAAAGGAGAAATTGATTCAGCTTTGGATGGC TGAAGGGTTGCTTGGGCCATCTCATGGAGAGATGGAAGATACAGGTGCTAGAAATTTTAATGACTTGCTTGCACGCTCGTTTTTCCAAGATTTCCAAACG GATGAGCTTGGAAACGTAATCTGTTGCAAGATGCGCGAACTTGTGCACGATCTTGCTTCGTTGGTGACAAAATCAGAGACAGTGATTTGGGAGGCTGGTT CAGCTATAGACGGTACATTTCGTGCCCGACATCTAAATCTCCTTTCTTATGACAGAGATGGACCAGCATTTCTAAAGGATGGTGCTAGAAAATTGCGTAC ATTATTCAGCAAGTCTTGGGAATTTAGAGAGCTGCCAGATTCAATTTGCTTGCTGAAACATTTGAGGTATCTGGATGTTTCACAAACAAATATCAAAGCA TTCCCGAAATCCATCACGAAGCTCCATCATTTGCAAACCTTAAGATTCCGTAGATGTTGGTTACTCGAAAAGCTTCCCAACAAAATGGAGTATTTGGCGA GCTTGAGACATATTGACTTTAGTCATACGCCAGCTGATGTTGGATGCTTAACTGGTCTTAGAACACTGCCATTCTTTGAAGTGGGAACTGGGAGGGGAGT TGGAATAGTCAATCTGGAGCATGTCAGAGACAAAAAAGAAGCTACGGGAGCAAGCCTGTTTGGAAAAGCAAAGATTAACGCATTGGTATTGGTATGGAGT TCAGAAAGAAAAAGCAGCAGCTCCAGCATCAATTACAAGGATGTGTTGGAAGGCCTCCAGCCTCACCCAGACATACGAAGCTTAGAGATTGAGAATTATC AGGGTGATGAATTCCCACCATGGCTTTTGATGCCAACACTCAATAATTTGGTGGTGCTGAAATTGGAAGGCTGCAAAAAACTTCCCACAGCAGGAAATCT TTCTCATCTTGAAATTCTTGAGATAGAAGGAATGGATGGTGTAAAGAAAATAGGTGAGGAGTTTTATAGTAGTGGTGGAAGTGGTACGGGTCCAATATTT CCAGCATTAAAAAGATTGTCTCTAGTGAATATGTGGAGTCTAGTGGAATGGATGATACCTGCTACTGTAGCTGGTGGAGTACAGGCAGCACTTCCTTGTC TCGAAGAGTTGTACATGAGTTGGAGTCCGGAGTTAAGAAGCTGTGATGCTTTGAGTCATATACCTGGCGAATTCCATGCCTCTGCGACATCTCTTAAATA TTTAACCATATTGGGTTGCTCCAGTCTAACATCCATTCCAAGCCTTCAAAACTGCACAGCTCTGGAGGTATTGTCTATTTATAAGTGCTACAACGTGGTG TCTATTATTCTAGAATTGCATTCTCTTAAAAGTGATTTGAAAGTCAAGGACTGCAGGAAGCCTCTCTTCTTTTATGACGATGACGATTTACATGGAGGAG AATTAAGATTGCATTCTCTTATTCAATTAGAAATCAGCTTCTGTCAGAATTTAAGTCATATCCCGGAAGATTTCTTTTGCGGCCTCAACCAATTGAGGGT ATTGAAAATTGGTAGTTTCTCAGAGGAGTTGGAGGCATTTCCTGGAATGAATTCAATCCACCACTTGGGTGGTTCCCTTAAAAAACTAAAGATATTTGGA TGGAAGAACCTGAAGAGTCTACCACATCAACTTCAACACCTCACCTCCCTTGTGAAATTAAAGATCTTTTATTTTGACGGAGAGGAATTTGACGAAGCAT TGCCAGACTGGTTGGCCAACCTTTCTTCTCTTCAAGAGCTTACAATTTGCTATTGTAAGAATTTCAAGTGTCCGCTTCTTCAGCAAAATTGCTTCGAGGG CAGTGGGTCTGAGTGGCACAAGATTTCTCGTATCCTATATATCAATATAGAAAATAAATAG
AA sequence Show only first row Show all	>Potri.004G197800.2 pacid=42796031 polypeptide=Potri.004G197800.2.p locus=Potri.004G197800 ID=Potri.004G197800.2.v4.1 annot-version=v4.1 MIYKIFRRKVEIQNSLKRKVRSFLSLSNPIAFHLCVALKVQKIKVSLDELRKDAIGYGLGVLYTTPQPSLHPKTDSFLGSSEVVIGRVDDVSKIMNLMVS SCRQQVLSVIPIVGMAGLGKTTLAKMVLKEVKDRKLFDVIFWICVSDSFDDERILGEMLQTLDKNTGGISNINTIMTNLERQLKDKKFLLVLDDVWNEEY GKWESLRDRLLKVVGINHGNAVVVTTRLPLVASIMENPPVFRHELKQLSNDECWSIIRKIVSRNGGESIPSELEAVGIDIAKKCGGVPLAASIIGGMLLS EKKEKWLSIKKNEAVEKFNLTKKLLPVLKLSFDHVSSESLQRCFAYCSIFPKDFEIEKEKLIQLWMAEGLLGPSHGEMEDTGARNFNDLLARSFFQDFQT DELGNVICCKMRELVHDLASLVTKSETVIWEAGSAIDGTFRARHLNLLSYDRDGPAFLKDGARKLRTLFSKSWEFRELPDSICLLKHLRYLDVSQTNIKA FPKSITKLHHLQTLRFRRCWLLEKLPNKMEYLASLRHIDFSHTPADVGCLTGLRTLPFFEVGTGRGVGIVNLEHVRDKKEATGASLFGKAKINALVLVWS SERKSSSSSINYKDVLEGLQPHPDIRSLEIENYQGDEFPPWLLMPTLNNLVVLKLEGCKKLPTAGNLSHLEILEIEGMDGVKKIGEEFYSSGGSGTGPIF PALKRLSLVNMWSLVEWMIPATVAGGVQAALPCLEELYMSWSPELRSCDALSHIPGEFHASATSLKYLTILGCSSLTSIPSLQNCTALEVLSIYKCYNVV SIILELHSLKSDLKVKDCRKPLFFYDDDDLHGGELRLHSLIQLEISFCQNLSHIPEDFFCGLNQLRVLKIGSFSEELEAFPGMNSIHHLGGSLKKLKIFG WKNLKSLPHQLQHLTSLVKLKIFYFDGEEFDEALPDWLANLSSLQELTICYCKNFKCPLLQQNCFEGSGSEWHKISRILYINIENK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197800 [exp]	0	1
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.001G276500 [exp]	3.16	0.8715
AT1G69550			disease resistance protein (TI...		Potri.004G202683 [exp]	4.00	0.8408
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.018G047500 [exp]	12.00	0.8195
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197900 [exp]	13.74	0.7948
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Potri.006G116000 [exp]	14.69	0.8184
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.011G094100 [exp]	15.87	0.8368
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261300 [exp]	18.70	0.7769
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	19.10	0.8371	Pt-CRP.3
AT4G27220			NB-ARC domain-containing disea...		Potri.019G009198 [exp]	20.56	0.7780
AT2G33170			Leucine-rich repeat receptor-l...		Potri.001G053400 [exp]	23.21	0.7590

Compare expression of checked genes

Potri.004G197800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.