Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 315 / 1e-91 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 291 / 7e-82 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G07040 176 / 5e-45 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G50950 171 / 1e-43 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 155 / 1e-38 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 155 / 1e-38 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46710 142 / 1e-34 NB-ARC domain-containing disease resistance protein (.1) AT5G43470 142 / 3e-34 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58410 141 / 4e-34 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 139 / 1e-33 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G197800 [exp] 1015 / 0 AT3G14470 292 / 1e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 764 / 0 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 764 / 0 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170400 [exp] 758 / 0 AT3G14470 401 / 3e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 755 / 0 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.003G015500 [exp] 745 / 0 AT3G14470 402 / 1e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170700 [exp] 741 / 0 AT3G14470 409 / 3e-124 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135800 [exp] 740 / 0 AT3G14470 403 / 3e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.004G169800 [exp] 738 / 0 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 388 / 2e-117 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 387 / 1e-115 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 381 / 4e-115 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 366 / 2e-107 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 359 / 5e-106 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 357 / 6e-105 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 336 / 8e-98 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 328 / 9e-95 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 323 / 2e-93 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 298 / 9e-85 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.004G197900.2 pacid=42796464 polypeptide=Potri.004G197900.2.p locus=Potri.004G197900 ID=Potri.004G197900.2.v4.1 annot-version=v4.1 ATGTCAAACATTCAAGCAGTGCTACAAGTTGCTGAAGAAAGACAAATTACGGTTGATATGTGGAGGTTTTGGTTGGATGAGGTTCGAGACAGAGCTTACC AAGCTCAAGATGTGCTGGATGAGCTTGGTTATGAGATTATTCAACGGCAGCTAGAGACTCAAGACAGTATGAAAGGGAAGGTATGTAGCTTCTTCTCTCT CTCCAACCCAATAGCATTTGGTCTGAGGTTGACCCAAGAACTTCAAAAGATCAATGAGTGCTTTGATGAGCTTCGAGAAATAGCAACTTCGTATGGGCGT ATAGTTCTATCTGCAGATACAACTCCTCAACCTAGACGCCACTCAATGACAGACTCTTTCTTTTTCCTCTCAGAAGTTGTCGAAGGAAGGGGTGATGATG TCTCTAAAATTATTAACTTGTTGATTAGTTCTTGCAGTCAACGAGTTCTTTCTGTCATTCCTATAGTGGGAATGGCCAGGCTCGGAAAGACTACTGTAGC AAAAATGGTGCACCGAGAAGTTAAAGACAGAAAACTTTTTGATGTAACATTTTGGATTTGTGTTTCTGATAGTTTTGACGATGAATGGATTTTAGGAGAA ATGCTGCTAACTCTTGATAAAAACACTGATGGGATAACTGGAATGGATGCAATAATGACACATCTTCGAGAAGAGTTAGAGACTAAAACATTTCTTCTCA TACTTGATGATGTGTGGAACGAAGATTATGAGAGGTGGAAGATTTTAAAGGATTGTCTATTAAAAATTAGTGGTAATAATAGGAATGTTGTTGTTGTTAC TACTCGTAGTAGACTAACAGCATCAATAATGGAGAGTCAGACTGCATGTAGTCATGAGCTGAAACAACTGTCAAATAATGAATGTTGGTCAATTATTAGG GAAATAGTGTCTAGAAATGGAGAGTCGATTCCTTCAGAATTGGAGGCTATCGGAATAGATATTGCAAAAAAGTGTGGGGGGGTGCCAGTAGTTGCTAGAG TTTTAGGGAGTATGTTGTTTCGTGAAAAGGACAAGGATAAATGGAGTTCAATAAGAGACAGTGATGCTGTTGAGATGTCAAGACACTATGATCAAGTTTT ACAACTATTGAAATTAAGTTTCGATCATTTGCCTTCTACTTCTCTGCAACGCTGTTTTTCTTATTGTTCTATTTTTCCTAAAGATTTTGAGATTGAAAAG GAGAAACTGATTCAGCTTTGGATGGCTGAAGGGTTTCTTGGGTCATCTGTTCATTGGGAGATGGAAGATGAAGGAGATAGAAACTTTAATGTCCTGCTTG CACGTTCGTTTTTCCAAGATTTCCAAACGGATGAGCTTGGGAATGTAATGTGTTGCAAGATGCCCAATCTTGTGCACGATCTAGCTTTGATGGTGACAAA ATCGGAGACAGTGATTCAGAAGCCTGGCTCAGCTATAGACGGTACATTTATAAGACATCTAAATCTCATTTCTTCTGATGAGAGAAATGGACCAACATTT CTATATGATGGTAGAAAATTGCGTACATTATTCTCAAGATTCCTTGACAAGTCTTGGGAATTTAGAGCTTTGCGAAGTCTGACCTTGAATGATGCTCGTA TGACAGAGTTGCCAGATTCAATTTGCAGGCTGAAACATTTGAGGTATCTCGACGTTTCACGAACAGATATCAAAGCGCTTCCAAAATCCATCACGAAGCT CTATCATTTGCAAACCTTAAGATTCAGCGACTGCGGGTCACTCATAAAGCTTCCCAACAAAATGGAATATTTGGTGGGCTTGAGACATATTGACTTTAGT CATACGCCAGCTGATGTTGGATGCTTAACTGGTCTTCGATCACTGCCATTCTTTGAAGTGGGTCAGGATAAGGGCCACAAAATTGAAGAACTGGGATGCT TGAAGGAACTAAGAGGGAGGTTGAGAATAGTCAATCTGGAGCATGTAAGAGACAAAGAAGAAGCCAAGGGAGCAAACCTGTCTGGAAAAGAAAATATTAA CACATTGGTATTTGTATGGAGTTCAGAAAGAGAAAGCAGCAGCTCCAGCATCAATTACAAGGATGTGTTGGAAGGCCTCCAGCCTCACCCAGACATACGA AGCTTAGAGATTGAGAATTATCAGGGTGATGAATTCCCACCATGGTTTTTGATGCCAATACTCAATAATTTGGTGGTGCTGAAATTGAAAGGCTGTAAAA AACTTCCTCCAGCAGGACATCCTTCTCATCTTCAAATTCTTGAGATAGAAGGAATGGATGTTGTGGAGATAATAGGTGAGGAATTTTATAGCAGTGGTGG AATGGAAGTAGCATTTCCTTGCCTGGAAGAGTTGAACATTAATGGGTGTCCCAAGTTAGAAAGCATTCCATCCATGAGCCATCTTTCATCAAAACTTGTA AGATTGACAATCAGAGACTGTGATGCATTGAGTCATATATCTGGCGAATTCCAAGCCTCTGCGAAATCTCTTAAATATTTAACCATAAGGCGTTGTTCCA ACCTGTCATCCATTCCAAGCCTTCAAAGCTGCATAGCTCTGGAGGCATTGTCTATTTCTACGTGCTACAATCTGGTATCGCCTGTTTTTCTAGAATCGCG TTCTCTTACAAGTGTATTCATTGGTTGGTGTGGAAAAGCAAGTGTTCGAATTAGTTGGCCACTATCCTACGCAAATATGAAGGAATTGAATATCGAGATC TGCGGGGAGCTTATCTTCTCTGATGATTTACATGGACGAGAAGTGTGGCCTTCTCGTTTTCAATCACTAGTCATTAGATGCTGTGATCAATTCAAGTCAG TTCCTGATGGTTTAAAAAGAAGACTGCATTCTCTTGTTCGATTAGATATCAGCTGGTGTCGAAATTTAAGTCATATTCCGGAAGATTTCTTTTGCGGCCT CAACCAATTGAAGGGATTGCTGGTGGTTTCTCGCAGGAATTGGAGGCATTTCCTGGAATGA
AA sequence Show only first row Show all	>Potri.004G197900.2 pacid=42796464 polypeptide=Potri.004G197900.2.p locus=Potri.004G197900 ID=Potri.004G197900.2.v4.1 annot-version=v4.1 MSNIQAVLQVAEERQITVDMWRFWLDEVRDRAYQAQDVLDELGYEIIQRQLETQDSMKGKVCSFFSLSNPIAFGLRLTQELQKINECFDELREIATSYGR IVLSADTTPQPRRHSMTDSFFFLSEVVEGRGDDVSKIINLLISSCSQRVLSVIPIVGMARLGKTTVAKMVHREVKDRKLFDVTFWICVSDSFDDEWILGE MLLTLDKNTDGITGMDAIMTHLREELETKTFLLILDDVWNEDYERWKILKDCLLKISGNNRNVVVVTTRSRLTASIMESQTACSHELKQLSNNECWSIIR EIVSRNGESIPSELEAIGIDIAKKCGGVPVVARVLGSMLFREKDKDKWSSIRDSDAVEMSRHYDQVLQLLKLSFDHLPSTSLQRCFSYCSIFPKDFEIEK EKLIQLWMAEGFLGSSVHWEMEDEGDRNFNVLLARSFFQDFQTDELGNVMCCKMPNLVHDLALMVTKSETVIQKPGSAIDGTFIRHLNLISSDERNGPTF LYDGRKLRTLFSRFLDKSWEFRALRSLTLNDARMTELPDSICRLKHLRYLDVSRTDIKALPKSITKLYHLQTLRFSDCGSLIKLPNKMEYLVGLRHIDFS HTPADVGCLTGLRSLPFFEVGQDKGHKIEELGCLKELRGRLRIVNLEHVRDKEEAKGANLSGKENINTLVFVWSSERESSSSSINYKDVLEGLQPHPDIR SLEIENYQGDEFPPWFLMPILNNLVVLKLKGCKKLPPAGHPSHLQILEIEGMDVVEIIGEEFYSSGGMEVAFPCLEELNINGCPKLESIPSMSHLSSKLV RLTIRDCDALSHISGEFQASAKSLKYLTIRRCSNLSSIPSLQSCIALEALSISTCYNLVSPVFLESRSLTSVFIGWCGKASVRISWPLSYANMKELNIEI CGELIFSDDLHGREVWPSRFQSLVIRCCDQFKSVPDGLKRRLHSLVRLDISWCRNLSHIPEDFFCGLNQLKGLLVVSRRNWRHFLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197900 [exp]	0	1
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.018G047500 [exp]	4.89	0.8290
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.010G046100 [exp]	5.65	0.8052
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Potri.006G116000 [exp]	7.34	0.8222
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433466 [exp]	8.48	0.7928
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.004G070500 [exp]	9.00	0.7619
AT4G34660			SH3 domain-containing protein ...		Potri.003G105200 [exp]	9.16	0.7520
AT3G22550			Protein of unknown function (D...		Potri.010G085700 [exp]	10.95	0.7740
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.018G109201 [exp]	11.22	0.7896
AT4G27190			NB-ARC domain-containing disea...		Potri.001G422800 [exp]	11.95	0.7814	Pt-RGA-II24.59
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.018G023000 [exp]	13.26	0.7784

Compare expression of checked genes

Potri.004G197900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.