Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42005 592 / 0 Transmembrane amino acid transporter family protein (.1) AT4G38250 589 / 0 Transmembrane amino acid transporter family protein (.1) AT5G65990 501 / 7e-177 Transmembrane amino acid transporter family protein (.1) AT3G11900 247 / 2e-77 ANT1 aromatic and neutral transporter 1 (.1) AT5G15240 111 / 7e-27 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 92 / 7e-20 Transmembrane amino acid transporter family protein (.1) AT3G28960 83 / 5e-17 Transmembrane amino acid transporter family protein (.1) AT2G41190 81 / 2e-16 Transmembrane amino acid transporter family protein (.1) AT5G02170 81 / 2e-16 Transmembrane amino acid transporter family protein (.1.2) AT5G16740 81 / 2e-16 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G167900 [exp] 761 / 0 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 598 / 0 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G064500 [exp] 248 / 4e-78 AT3G11900 521 / 0.0 aromatic and neutral transporter 1 (.1) Potri.010G226000 [exp] 85 / 2e-17 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 82 / 1e-16 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 81 / 2e-16 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 80 / 5e-16 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 79 / 1e-15 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 74 / 3e-14 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022995 [exp] 650 / 0 AT2G42005 580 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10001390 [exp] 646 / 0 AT2G42005 581 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10026549 [exp] 556 / 0 AT2G42005 548 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10021089 [exp] 228 / 5e-70 AT3G11900 501 / 2e-176 aromatic and neutral transporter 1 (.1) Lus10017224 [exp] 225 / 4e-69 AT3G11900 502 / 3e-177 aromatic and neutral transporter 1 (.1) Lus10013835 [exp] 181 / 8e-56 AT2G42005 178 / 2e-55 Transmembrane amino acid transporter family protein (.1) Lus10005239 [exp] 95 / 5e-21 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10012824 [exp] 93 / 2e-20 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030683 [exp] 87 / 2e-18 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 84 / 2e-17 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.004G206800.1 pacid=42795240 polypeptide=Potri.004G206800.1.p locus=Potri.004G206800 ID=Potri.004G206800.1.v4.1 annot-version=v4.1 ATGGAGTCTGGAAAAAATGCAGCATTCTCATCTGCAAAAGCTCTACCAAGAGAAGACACACCTCTCATACCCAATTCCCCGACTCTATCCTCTCAATCCA AGACTTTTGCAAATGTATTCATTGCTATTGTTGGTGCTGGTGTTCTTGGTCTCCCTTATGCTTTTAAACGCACAGGTTGGATAATGAGTCTTATGATGCT TTTTTCTGTTGCTGGTTTAACTCATTATTGTATGATGTTGTTAATCCATACACGTAGAAAGCTTCAATCTTTATCTGGTGATTTCGCAAAGATTAACTCC TTTGGTGATCTGGGTTTCACCGTTTGTGGTTCTCTTGGGAGGTTTGTTGTTGATGTAATGGTTGTTTTGTCTCAAGCTGGATTTTGTATTGGTTATTTGA TATTTATTGGTAATACCATGGCTAATCTGTTCAATGCATCATCACCTGATAGCTTGACTTCTCAAGTTATTGCCTTCTCAATGTCCGCTAAGAGCTGGTA TATATGGGGCTGTTTTCCTTTTCAATTGGGATTAAGTTCTGTTGCAACGTTGACCCATTTGGCTCCGTTGAGCATTTTTGCTGATGTTGTTGATCTTGCT GCCATGGGAGTGGTGATTGCTAAGGATGTTTTTTTAATGATGGAGAATAGGCCTGAAGTTAGAGCCTTTGGAGGTTTGTCTGTGTTTTTCTACGGGATGG GCGTGGCTGTATATGCATTTGAAGGGGTTGGTATGGTTTTGCCAATAGAATCTGAAATGAAAGAGAGGGAAACGTTTGGGAAAATCTTAGGTTTGAGCAT GGGGCTTATTTCAGTGATATATGGAGCTTTCGGTGTGCTGGGTTACTTTGCATTTGGAAATGATACTCAGGATATTATCACTGCTAATTTAGGGCCTGGG CTCATTAGCCTTTTGGTTCAATTGGGTCTTTGTATCAATCTGTTTTTCACATTTCCCCTGATGATGAACCCTGTTTATGAGATAGTGGAGAGAAGGTTCT GGGGTGGCAGGTATTGCCTGTGGCTTAGATGGCTGTCGGTTATGGTGGTTACTCTGGTGGCTTTAACGGTGCCAAATTTCGCCGATTTCTTGTCCTTGGT GGGGAGCAGTGTATGTTGTGGATTGGGATTTGTTTTGCCAGCTTTGTTTCACTTGCTTGTGTTCAAGGAAGAGATGAACTGGAAAGGATGGACAATTGAT GTGGGGATTGTGTCCTTGGGCCTTGTTCTTGCGGTTTCAGGGACTTGGTATGCTCTCATGGAGATCTTCGCTATCAAGGCATAG
AA sequence Show only first row Show all	>Potri.004G206800.1 pacid=42795240 polypeptide=Potri.004G206800.1.p locus=Potri.004G206800 ID=Potri.004G206800.1.v4.1 annot-version=v4.1 MESGKNAAFSSAKALPREDTPLIPNSPTLSSQSKTFANVFIAIVGAGVLGLPYAFKRTGWIMSLMMLFSVAGLTHYCMMLLIHTRRKLQSLSGDFAKINS FGDLGFTVCGSLGRFVVDVMVVLSQAGFCIGYLIFIGNTMANLFNASSPDSLTSQVIAFSMSAKSWYIWGCFPFQLGLSSVATLTHLAPLSIFADVVDLA AMGVVIAKDVFLMMENRPEVRAFGGLSVFFYGMGVAVYAFEGVGMVLPIESEMKERETFGKILGLSMGLISVIYGAFGVLGYFAFGNDTQDIITANLGPG LISLLVQLGLCINLFFTFPLMMNPVYEIVERRFWGGRYCLWLRWLSVMVVTLVALTVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMNWKGWTID VGIVSLGLVLAVSGTWYALMEIFAIKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42005			Transmembrane amino acid trans...		Potri.004G206800 [exp]	0	1
AT1G33265			Transmembrane proteins 14C (.1...		Potri.011G147000 [exp]	4.89	0.8305
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	6.92	0.8364
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.010G191500 [exp]	9.89	0.8065
AT5G36930			Disease resistance protein (TI...		Potri.013G037599 [exp]	10.48	0.7367
AT1G60160			Potassium transporter family p...		Potri.008G147300 [exp]	10.81	0.7781
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.008G006700 [exp]	14.28	0.8257	EMB101.3
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Potri.006G244300 [exp]	19.77	0.7577	GLB3.1
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.017G111700 [exp]	21.90	0.7974
AT2G45340			Leucine-rich repeat protein ki...		Potri.014G068700 [exp]	22.62	0.8036
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Potri.003G050900 [exp]	25.21	0.7784	Pt-TIP2.3

Compare expression of checked genes

Potri.004G206800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.