Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50420 303 / 1e-98 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT1G66350 222 / 4e-67 GRAS RGL1 RGA-like 1 (.1) AT5G17490 220 / 3e-66 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 210 / 2e-62 GRAS RGL2 RGA-like 2 (.1) AT2G04890 194 / 1e-57 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 194 / 6e-56 GRAS SCL5 scarecrow-like 5 (.1) AT2G01570 186 / 8e-53 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G21450 184 / 3e-52 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 182 / 4e-52 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G14920 181 / 1e-51 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023500 [exp] 309 / 4e-101 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.009G048700 [exp] 306 / 2e-100 AT1G50420 682 / 0.0 scarecrow-like 3 (.1) Potri.003G202100 [exp] 306 / 6e-100 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.017G125200 [exp] 224 / 4e-67 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 215 / 9e-64 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 208 / 5e-61 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 204 / 8e-60 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 201 / 7e-58 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.003G122400 [exp] 198 / 6e-57 AT1G63100 696 / 0.0 GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034374 [exp] 481 / 4e-169 AT1G50420 279 / 2e-89 scarecrow-like 3 (.1) Lus10005078 [exp] 476 / 3e-167 AT1G50420 273 / 3e-87 scarecrow-like 3 (.1) Lus10019773 [exp] 315 / 3e-103 AT1G50420 543 / 0.0 scarecrow-like 3 (.1) Lus10039562 [exp] 304 / 5e-99 AT1G50420 579 / 0.0 scarecrow-like 3 (.1) Lus10024177 [exp] 303 / 1e-98 AT1G50420 582 / 0.0 scarecrow-like 3 (.1) Lus10022418 [exp] 297 / 4e-97 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10009717 [exp] 287 / 1e-92 AT1G50420 614 / 0.0 scarecrow-like 3 (.1) Lus10033583 [exp] 212 / 1e-62 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 210 / 6e-62 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10041540 [exp] 212 / 8e-62 AT1G66350 317 / 2e-100 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.004G208700.2 pacid=42794018 polypeptide=Potri.004G208700.2.p locus=Potri.004G208700 ID=Potri.004G208700.2.v4.1 annot-version=v4.1 ATGAGTTCCATGACACCATTGTTAAAACCAGATGTGACCTTATCTCTTACGTTGTCACCCAGCTCCCCTTCTCCTCATGACCAAACTCTAAAGCCTGAAG AAAGAGGTATACGTCTTATCCAACTCCTTCTAAAATGTGCAAAACATGCATCCTCGGGCAATCTTCATCGAGCCGATGCGTGTCTTTTGGAGATATCGGT GCTTTCATCGATTTTGGGTGATTGCATGCAAAGGCTGGCTGCTCGTTTTGCCTCCGCCCTTGCCATTCGCCTTGTCAAGCGTTGGCCCGGCATACACAAG GCGCTGAACCAAGCCCAACAACCCAAAGTCGACCTTGATAGGGCCAAGCTCCTCTTTACCAGAACCTTCCCTTACCTTAGTTTCGCTTATGCCATCATAG CCAAAACCTTACTCCATGCCATGGCAAACGAGCGTGTGATTCACATCGTAGATTTGGGCTCCGGTGACTCGAACTTGTGGGTCGCACTTCTCCGTGGTTT CGCCAACTCACCACATGGGCCTCCACATTTGAAGATCACCTGTGTTAATGGCAGCAAAGCTATTCTTGAGAAGTTAGGTCAAAGGCTTGTCAAAGAAGCA GAAAGCGTGGGCGTACCCTTTCAATTTAATTCTATAAACGCGAGCTTGAGAGAGTTAACAAAAGACATGTTTAAGGCTGGATCAGGAGAAGCGCTAGCTT TCGTATCAATATTAAATCTTCACGTTTTATTATCTGAAGATGACCAAGTGGTTGCACATTTTGGGGTTAACAAGAACGACGGCATTAAAGATTGCAAGCA AATTGGTGATTTTCTAGCGATGATTCGGTCAATGTCACCTACGTTATTATTTGTAGTAGAGCAAGAAGCGGACCACAATTTGAATCGATTGGTGGACCGA TTTGTAGAGGGATTGAATTATTACAGCGCAGTGTTTGACTCGATAGACGCCACTTTGGCGAGTAATCTGGCTAGTGATGAAAGGCTTGTTTTAGAGGAAA TGTTTGGAAGAGAGATCGAGAATATTGTAGCCTGTGAGGGGTTGGAAAGGATTGAGAGACATGAGAGGTATGCAAGGTGGGTAGTTAGGCTTGCACAAGC AGGGTTTAAGCCAGTTCGGTTCTGGCATAGTTCAGGCGAGGATGCTAAGCAAATTATGGATGCCTTCGGAAAGAATGGGTACAAGACTGTTATTGAGAGA ACAGGTTTGATGATTTGTTGGCGTGAACGACCACTATATGCTCTTACTGCTTGGACCTGTTAG
AA sequence Show only first row Show all	>Potri.004G208700.2 pacid=42794018 polypeptide=Potri.004G208700.2.p locus=Potri.004G208700 ID=Potri.004G208700.2.v4.1 annot-version=v4.1 MSSMTPLLKPDVTLSLTLSPSSPSPHDQTLKPEERGIRLIQLLLKCAKHASSGNLHRADACLLEISVLSSILGDCMQRLAARFASALAIRLVKRWPGIHK ALNQAQQPKVDLDRAKLLFTRTFPYLSFAYAIIAKTLLHAMANERVIHIVDLGSGDSNLWVALLRGFANSPHGPPHLKITCVNGSKAILEKLGQRLVKEA ESVGVPFQFNSINASLRELTKDMFKAGSGEALAFVSILNLHVLLSEDDQVVAHFGVNKNDGIKDCKQIGDFLAMIRSMSPTLLFVVEQEADHNLNRLVDR FVEGLNYYSAVFDSIDATLASNLASDERLVLEEMFGREIENIVACEGLERIERHERYARWVVRLAQAGFKPVRFWHSSGEDAKQIMDAFGKNGYKTVIER TGLMICWRERPLYALTAWTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.004G208700 [exp]	0	1
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166400 [exp]	4.00	0.9703
AT1G27040			Major facilitator superfamily ...		Potri.002G129500 [exp]	7.07	0.9697
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.002G209602 [exp]	9.79	0.9692
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039600 [exp]	11.66	0.9691
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G001401 [exp]	14.69	0.9591
					Potri.005G081100 [exp]	15.90	0.9534
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.006G248500 [exp]	18.33	0.9618
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139600 [exp]	18.70	0.9611	CYP749A9
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.019G023600 [exp]	20.19	0.9611
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	21.49	0.9593

Compare expression of checked genes

Potri.004G208700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.