Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49840 700 / 0 ATP-dependent Clp protease (.1) AT1G33360 582 / 0 ATP-dependent Clp protease (.1) AT5G53350 581 / 0 CLPX CLP protease regulatory subunit X (.1) AT5G19990 48 / 1e-05 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 48 / 2e-05 RPT6A AAA-type ATPase family protein (.1) AT5G58290 47 / 2e-05 RPT3 regulatory particle triple-A ATPase 3 (.1) AT1G79560 47 / 3e-05 EMB36, EMB156, EMB1047, FTSH12 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) AT5G52882 45 / 0.0001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G09100 45 / 0.0001 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT2G45500 45 / 0.0001 AAA-type ATPase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089500 [exp] 615 / 0 AT1G33360 742 / 0.0 ATP-dependent Clp protease (.1) Potri.015G012900 [exp] 567 / 0 AT5G53350 675 / 0.0 CLP protease regulatory subunit X (.1) Potri.012G015600 [exp] 552 / 0 AT5G53350 709 / 0.0 CLP protease regulatory subunit X (.1) Potri.010G098300 [exp] 48 / 2e-05 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 48 / 2e-05 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.016G028000 [exp] 47 / 2e-05 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 47 / 2e-05 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.014G071900 [exp] 47 / 4e-05 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2) Potri.003G133700 [exp] 47 / 5e-05 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010691 [exp] 727 / 0 AT5G49840 635 / 0.0 ATP-dependent Clp protease (.1) Lus10036701 [exp] 560 / 0 AT5G53350 706 / 0.0 CLP protease regulatory subunit X (.1) Lus10040561 [exp] 550 / 0 AT1G33360 721 / 0.0 ATP-dependent Clp protease (.1) Lus10037222 [exp] 542 / 0 AT5G53350 651 / 0.0 CLP protease regulatory subunit X (.1) Lus10000933 [exp] 528 / 0 AT1G33360 711 / 0.0 ATP-dependent Clp protease (.1) Lus10031169 [exp] 49 / 9e-06 AT1G79560 1356 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10031745 [exp] 49 / 1e-05 AT1G79560 1357 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10006854 [exp] 48 / 1e-05 AT5G58290 526 / 0.0 regulatory particle triple-A ATPase 3 (.1) Lus10009233 [exp] 48 / 2e-05 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10038001 [exp] 48 / 2e-05 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0671 [poplar] [flax] AAA_lid PF10431 [poplar] [flax] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Potri.004G229400.2 pacid=42795290 polypeptide=Potri.004G229400.2.p locus=Potri.004G229400 ID=Potri.004G229400.2.v4.1 annot-version=v4.1 ATGCTTTCGCTTCTCAAACACTCCAAAGCCATCGCAAACACCGCACTCAAACACCTAACCACCAAAACTTTCACTTCGCCGCCAACAAAACCCCTAATTC TCTCACAAACATCGACAAAAACCCTAGGTTTAGGGTTTATTCGGCGATTAAGCGACAAGACTACAGCAGACTACGACTACATCAAGGCTGACGTTAACTG TCCTCGATGCACCTCTCATATGCCGGTCCTATTCTCGAACCGGCCTTTATCAATTACCGGACGAGAAACCGGTATCTATCAAGCGGTCAATTTCTGTCCT GCTTGCAAAACAGCGTTTTATTTTAGGCCGTTTAAGTTGGAGCCTCTACAGGGGAACTTCATTGAGCTTGGTAGGGTTAAGGGTTTGTATAATAATAATA ATAATAATAACTGTAAGGATGTAGAGGGGATTATTGAGAAAGAATGTGGTAAAAGTGGGAGAAACGCGGAGGAAGTTAGTGGTGGAGGTGGCGGTGGGGG GTTGGAGAGAGAGTTGCCTACGCCTAAAGAGATTTGTAAAGGGCTCGATGAGTTTGTTATTGGTCAGGACAAAGCCAAAAAGGTGCTTTCTGTGGCAGTT TACAACCACTACAAGAGGATATATCATGCCTCCAAGCAGAAAAAGTCACATGCACCCTGGAGTCACAGTGATGGTGAGAATGATGAGAACGAGTTTATTG AGCTAGATAAGAGCAATGTACTGTTGATGGGTCCCACTGGCTCAGGGAAGACATTACTGGCAAAAACACTAGCTCGTATTGTGAATGTACCCTTCGTCAT TGCCGATGCAACAACGCTAACACAGGCAGGTTATGTTGGAGAAGATGTGGAATCAATATTATATAAGCTACTAGTGGTAGCTGAATTCAATGTAGAAGCA GCTCAACGAGGGATTGTTTACATTGACGAAGTTGACAAAATAACCATGAAGGCCGGGAGTTCCAGCATTGGAAGAGATGTGTCTGGAGAGGGTGTTCAAC AGGCATTGTTGAAAATGTTGGAAGGAACCGCAGTAAATGTTCCAGTTCCTGATAAAGGACCTGGGAAGCATCCTCGTGGTGATACAATCCAGGTAGATAC AAAAGACATCCTTTTCATATGTGGTGGGGCATTTGTAAATTTGGAGAAAACCATTTCAGAACGACGACAAGATGCTTCTATTGGCTTTGGAGCACCAGTT CGTGCAAACATGAGGGCTGGTGCAATAACTAATGCAATGGTGACATCGTCACTGCTGGAATCTGTAGAAAGTGGTGATCTTGTTGCGTATGGCCTCATTC CTGAATTTGTTGGACGATTTCCTGTTTTAGCAAGCTTATTAGCTTTAAATGAGGACCAACTTGTTCAGGTCCTCATGGAGCCAAAAAATGCTCTTGGTAA ACAGTATAAGAAGATTTTCAATATGAACAATGTGAATTTACATTTTACGGGAAATGCATTGAGATTGATTGCAAAGAAAGCAATGGCAAAGAACACTGGG GCCCGAGGTTTAAGAGCCATATTGGAAAACATCCTGACAGAAGCAATGTTTGAGACTCCAGAAAACAAGTCACAATCTAATTGCATAACTGCTGTTTTGG TCGATGAAGAGGCTGTTGGCTTGATGGATACACCGGGGTGCGGAGCAAAAATTGTCCATGGAGACAGTGCACTGGAGCATAAATTGCAGGAGAGAAAGGA AGAGGTGGTGGGGTTGCCTATGGAGAAATGCAGGGTGAACCAGAACCTTGCTCAAGGGCCTTGA
AA sequence Show only first row Show all	>Potri.004G229400.2 pacid=42795290 polypeptide=Potri.004G229400.2.p locus=Potri.004G229400 ID=Potri.004G229400.2.v4.1 annot-version=v4.1 MLSLLKHSKAIANTALKHLTTKTFTSPPTKPLILSQTSTKTLGLGFIRRLSDKTTADYDYIKADVNCPRCTSHMPVLFSNRPLSITGRETGIYQAVNFCP ACKTAFYFRPFKLEPLQGNFIELGRVKGLYNNNNNNNCKDVEGIIEKECGKSGRNAEEVSGGGGGGGLERELPTPKEICKGLDEFVIGQDKAKKVLSVAV YNHYKRIYHASKQKKSHAPWSHSDGENDENEFIELDKSNVLLMGPTGSGKTLLAKTLARIVNVPFVIADATTLTQAGYVGEDVESILYKLLVVAEFNVEA AQRGIVYIDEVDKITMKAGSSSIGRDVSGEGVQQALLKMLEGTAVNVPVPDKGPGKHPRGDTIQVDTKDILFICGGAFVNLEKTISERRQDASIGFGAPV RANMRAGAITNAMVTSSLLESVESGDLVAYGLIPEFVGRFPVLASLLALNEDQLVQVLMEPKNALGKQYKKIFNMNNVNLHFTGNALRLIAKKAMAKNTG ARGLRAILENILTEAMFETPENKSQSNCITAVLVDEEAVGLMDTPGCGAKIVHGDSALEHKLQERKEEVVGLPMEKCRVNQNLAQGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	0	1
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	1.41	0.9303
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Potri.009G105600 [exp]	1.73	0.9227
					Potri.012G100001 [exp]	2.23	0.9165
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	3.74	0.9155	SUVH3.4,SDG950
AT3G18680			Amino acid kinase family prote...		Potri.007G110301 [exp]	4.00	0.8959
AT4G20325			unknown protein		Potri.006G280600 [exp]	4.47	0.9215
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	6.00	0.9140
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Potri.001G178900 [exp]	6.00	0.9156
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Potri.007G082100 [exp]	6.32	0.8903
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	6.63	0.9054

Compare expression of checked genes

Potri.004G229400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.