Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-STI.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02480 1189 / 0 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 1016 / 0 AAA-type ATPase family protein (.1) AT4G18820 353 / 2e-103 AAA-type ATPase family protein (.1) AT4G24790 342 / 4e-101 AAA-type ATPase family protein (.1.2) AT5G45720 341 / 7e-100 AAA-type ATPase family protein (.1.2) AT1G21690 77 / 8e-15 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G63160 62 / 9e-10 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G044900 [exp] 1935 / 0 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.012G091700 [exp] 361 / 4e-107 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G061700 [exp] 363 / 2e-106 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.015G088100 [exp] 353 / 4e-104 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.011G071300 [exp] 338 / 2e-97 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.005G181300 [exp] 71 / 1e-12 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 65 / 1e-10 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042401 [exp] 1199 / 0 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10026270 [exp] 777 / 0 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10033035 [exp] 368 / 7e-111 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10013665 [exp] 365 / 3e-109 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10005422 [exp] 361 / 1e-106 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10015234 [exp] 353 / 4e-104 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10007316 [exp] 349 / 6e-102 AT4G18820 1072 / 0.0 AAA-type ATPase family protein (.1) Lus10029265 [exp] 343 / 6e-100 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10028543 [exp] 67 / 3e-11 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10025689 [exp] 60 / 5e-09 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0604 [poplar] [flax] post-AAA PF12169 [poplar] [flax] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III
Representative CDS sequence Show only first row Show all	>Potri.004G230300.1 pacid=42794274 polypeptide=Potri.004G230301.1.p locus=Potri.004G230300 ID=Potri.004G230300.1.v4.1 annot-version=v4.1 ATGTCAGAAATGAGATTTTCTGATCCAAGCAGACTTCATTTAAAGAAGGAGCTTACTCAAATCAGGAAGGCAGCTAGAGTTTTGAGAGATCCAGGAACAA GTTCTTCATGGAAGTCACCTCTTAATTCAGCTAGATCTGCAGCGACTATGGCGGCGGCTGCGTCTTCTACTTCTGCTTCCGCTTGGAAGCATTTTGAGAC TGAGAATGCAATCCAAAATGGTGGTGGTGGTGGTAGTCATAATAACAATAGCGCCCATTTGGATTCGCATTTCAAGAGTGGGAATAATCATGGGAAAGAC AAAAGAGTGTTCCTTTACAATTGGAAGTCTCAGAAATCTTCCAGTGAGAAGAGTGCGTTGGCAAGGAATGATGCTGATGATGACTACGAGTCTTGTTCTA TTCAAGGGAGCCTTGATGACAGCCTGAGTGATGCAAGAAATGCTGGGGATTCGAAGAGTGACACTTATTTGGGTGAGACAAGGTCTGCTGCAATGATTTT CAGGTGTAGAGATGCAAATCTCGTGTCACCATCTATGAGAAGAGCTATGGGGATCAAGAAAAAGAGTAAGAAAACTAATGCCCGTTTCGATGTTTTGTCT AGATATCAACAAAAAGAGATGAACTTGAGGAGATTACTCAAGGGCCATCCTTCAATGGGCTTGGGTTTAGGTTTAGGAAGGGATGATGTTGTAGAGCAAT CTGATGATACTGAAGAATATAGTAATTCAGAGTACTTAAGAAAGATTTCTGGGGCATCCCCATTGCTGTTAAAACTTAAGCATAAGAATCGGTCACATTC TCCATCTAAATTATTGAGAACTACTCGAAAAGAGGACTCTTCTTATTCTCACAGCACACCTGCACTATCAGCTAGTTCTTATGATAAGTATCGTAAGCGC AATCCGAGCAATGTTGGATCTTGGGATGCCACCACAACCTCAGTGAATGATGGGGATGATGAGGATGATGATCATTTAGATTTACCTGGTCGCCAGGGAT GTGGCATTCCTTGCTACTGGTCCAAACGGACGCCAAGATACAGAGGTGTATGTGGGAGTAGTTGTTGCTCACCTTCCCTTTCAGATACTTTAAGGAGAAA AGGAAGTAGCATGTTCTGTGGTAGTCAGCCACTGTATCATAGACGCCGACGTTCATGGTCAATTTCAAATAAGCGCAGAATTGGTTCAAGAACTGGACAT GCATTGCTCCCATTGCTTACAAATAGTGGTGATGGCATAGGAGGGTCATCAATAGGAACTGGGCTTAGTGATGATGAGCTTTCTACAAACTATGGGGAAC TTGATTTAGAGGCCTTGAGTAGATTGGATGGGAGGAGGTGGTCAAGTTGCAGGAGTCAGGATGGGTTGGAGATTGTGGCTTTAAATGGAGACGGAGAAGA GGAAGGCACGCCTGAAAATATTGGAAGCTTAAGCCAGAAATACAAGCCAGTTTTCTTCAGTGAATTGATTGGGCAAAACATTGTTGTTCAATCACTTACC AATGCTATTTCTAGGGGAAGGATAGCACCGGTTTATCTTTTCCAAGGTCCACGTGGTATTGGTAAAACATCAGCAGCTAGGATTTTTGCCTCTGCCTTAA ACTGCACGTCTGCTGAAGAAATAAAACCATGTGGGTACTGTAGGGAATGCAGTGATTCCATTTCTGGGAAGACCAGGGATCTATGGGAAGTTGATGGCAC TGACAAGAAGGGAATTGATAAAGTTAGATACCTTCTGAAGAAAATTTCGCATAGGCCCCCATTGGGCTCTTCACATTACAAGGTTTTTCTTATCGATGAG TGTCACTTGTTACCCTCTAAGATGTGGTTAGCATTTCTCAAGTTTCTTGAAGAACCACCACAGCGAGTTGTGTTCATATTTGTAACAACTGATCCTGATA ATGTGCCCCGTACTGTACAATCACGATGTCAGAAGTACCTCTTCAACAAAATTAAAGATGGAGATATTGTGGCAAGACTGAGGAAAATTTCTAAAGAAGA GAATCTTGATGTTGAATTAGGTGCTCTGGATTTGATTTCTTTGAATGCAGATGGTTCACTTCGAGATGCTGAAACAATGTTAGACCAGTTGAGTTTGCTG GGGAAGAAGATAACAACGTCTCTTGTAAATGAATTGGTGGGGGTTGTTTCAGATGAGAAATTACTGGAACTTTTGGAACTAGCGATGTCTTCAGACACTG CAGAAACAGTAAAAAGGGCCAGGGATTTGATGGACTCTGGCGTTGATCCAATGGTTTTGATGTCTCAACTGGCTAGCCTCATTATGGACATTATTGCTGG GACATACAATGTTGTTGATGCCAAACATGGTGATTCACTCTTTGGTACACACAACTTGACTGAAGCAGAACTGGAGAGACTAAAGCATGCTTTGAGGCTT CTTTCAGAGGCTGAGAAACAGCTAAGGATCTCAAGTGACCGCTCAACATGGTTCACAGCAACTCTTCTACAGCTTGGTTCTACACCTTCAATGGATCTCA CTCAGTCAAGCAGCAGTAGGAGGCAGAGCTCCAGGACAACAGAGGAAGATCCTTCAAGTGCTTCAAAGGAATCCAAGGTTTACAAGACAAAGTCCAATGC TCAATATTTGACTCAGAGATCAAGTTCACCTCCATCCCTATACAGGGAAATAAATGGATGTTCCAGCCAACAAGGGGAATTTGGTTTTAATGCCAAGGCC CCTCGTAGTCGATTGGTGAATAGCCGTACTTCATCTACTTCATTGGATGATGAAATAACTGGAAATATGATATTTAGATACAAAAACTCAGAGAAGTTGG ATGATATATGGGAGAAATGTATTGAAAAGTGTCACTCACAGACATTGAGGCAGCTGCTGCATGCTCACGGAAAGCTTCTATCTATATCTGAAGTGGATGG AGCCCTTGCTGTTTATGTTGCATTTGAGGACCAAGATATTAAAGCCAGAGCTGAAAGGTTTTTGAGCAGTATCACAAATTCAATTGAAATAGTCCTTAGA CGCAATGTAGAGGTTAGAATTATTCTTATCACAGATGGTCTGGATTCTGTGATTTATGCGAATCAATCTGAGTTACAAGAAGGTCATAGGCAAGCAGACA CTACGTTGGCAATTGAGCTGGGAAAGAAGGCTAATTGCTCTGATGCAGTAGCTGGTTATTCCAATTTGGACTTGCAAGAAGAGTTCCCAAAACTATCCAA AGGAAGCTTTAATGATGCCAACGCTGAAAACAATGGAGAAGGGAAGCGGGAAATGCCAATGCAGAGAATAGAATCCATTATCCGTGAACAGAGGTTAGAA ACTGCCTGGTTACAGGCGGCAGAGAAGGGCACTCCAGGATCATTGAGTTGTTTGAAACCCGAGAAGAATCAGGTGTTGCCTCAAGACGACACCTATCAAC AAAGTCAAATAGATTCCATAGGTTCAGTGGCACCGTCCTCCCAGACATGGGGAGATGAATTAAATCATGAACTCAAAGTATTGAAGATGCAGAATCGGAG GGTTCACCATAAGGACCAGATTGGTCATATGGTGGACCATTATCCAATATCACCAAGCTTATTACATGGAAGCAGCTATGTGGTCAATGGAAGCAAAGAA AGCCTGGGATACGAGTCAAGTTCGGCTGGTGGAGGTTGCAGTGGGCTTTTATGTTGGAACACCAGCAGATCTCATAGAGCAAAGGTGAAAGAGACTCCAG TTCAACCTCGAGGCAGAAGTGGGCGATTTTCATTGTTTGGTGAGTGTGCAAAGCAAAAGAAACCGGATAGCAGAATTACAAGATAA
AA sequence Show only first row Show all	>Potri.004G230300.1 pacid=42794274 polypeptide=Potri.004G230301.1.p locus=Potri.004G230300 ID=Potri.004G230300.1.v4.1 annot-version=v4.1 MSEMRFSDPSRLHLKKELTQIRKAARVLRDPGTSSSWKSPLNSARSAATMAAAASSTSASAWKHFETENAIQNGGGGGSHNNNSAHLDSHFKSGNNHGKD KRVFLYNWKSQKSSSEKSALARNDADDDYESCSIQGSLDDSLSDARNAGDSKSDTYLGETRSAAMIFRCRDANLVSPSMRRAMGIKKKSKKTNARFDVLS RYQQKEMNLRRLLKGHPSMGLGLGLGRDDVVEQSDDTEEYSNSEYLRKISGASPLLLKLKHKNRSHSPSKLLRTTRKEDSSYSHSTPALSASSYDKYRKR NPSNVGSWDATTTSVNDGDDEDDDHLDLPGRQGCGIPCYWSKRTPRYRGVCGSSCCSPSLSDTLRRKGSSMFCGSQPLYHRRRRSWSISNKRRIGSRTGH ALLPLLTNSGDGIGGSSIGTGLSDDELSTNYGELDLEALSRLDGRRWSSCRSQDGLEIVALNGDGEEEGTPENIGSLSQKYKPVFFSELIGQNIVVQSLT NAISRGRIAPVYLFQGPRGIGKTSAARIFASALNCTSAEEIKPCGYCRECSDSISGKTRDLWEVDGTDKKGIDKVRYLLKKISHRPPLGSSHYKVFLIDE CHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFNKIKDGDIVARLRKISKEENLDVELGALDLISLNADGSLRDAETMLDQLSLL GKKITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARDLMDSGVDPMVLMSQLASLIMDIIAGTYNVVDAKHGDSLFGTHNLTEAELERLKHALRL LSEAEKQLRISSDRSTWFTATLLQLGSTPSMDLTQSSSSRRQSSRTTEEDPSSASKESKVYKTKSNAQYLTQRSSSPPSLYREINGCSSQQGEFGFNAKA PRSRLVNSRTSSTSLDDEITGNMIFRYKNSEKLDDIWEKCIEKCHSQTLRQLLHAHGKLLSISEVDGALAVYVAFEDQDIKARAERFLSSITNSIEIVLR RNVEVRIILITDGLDSVIYANQSELQEGHRQADTTLAIELGKKANCSDAVAGYSNLDLQEEFPKLSKGSFNDANAENNGEGKREMPMQRIESIIREQRLE TAWLQAAEKGTPGSLSCLKPEKNQVLPQDDTYQQSQIDSIGSVAPSSQTWGDELNHELKVLKMQNRRVHHKDQIGHMVDHYPISPSLLHGSSYVVNGSKE SLGYESSSAGGGCSGLLCWNTSRSHRAKVKETPVQPRGRSGRFSLFGECAKQKKPDSRITR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Potri.004G230300 [exp]	0	1	Pt-STI.4
AT3G14172			unknown protein		Potri.019G064000 [exp]	5.09	0.8186
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Potri.014G175350 [exp]	10.48	0.8415
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.005G146500 [exp]	12.24	0.8156
AT1G66910			Protein kinase superfamily pro...		Potri.017G116900 [exp]	13.78	0.7706
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Potri.003G044900 [exp]	15.03	0.8626	STI.5
AT5G60930			P-loop containing nucleoside t...		Potri.005G150800 [exp]	22.11	0.8611
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	27.20	0.7505	POL.2
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	27.83	0.7998
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Potri.014G149000 [exp]	30.98	0.8481	Pt-PAKRP1.1
AT4G32630			ArfGap/RecO-like zinc finger d...		Potri.018G035000 [exp]	34.64	0.7388

Compare expression of checked genes

Potri.004G230300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.