Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 313 / 5e-107 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 306 / 2e-104 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 293 / 4e-99 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 210 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 191 / 6e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 186 / 6e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50700 66 / 3e-12 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 66 / 3e-12 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT4G09750 66 / 5e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 59 / 7e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235600 [exp] 495 / 9e-179 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 335 / 1e-115 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 332 / 2e-114 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 331 / 7e-114 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 327 / 3e-112 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 325 / 2e-111 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 312 / 2e-106 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 281 / 2e-93 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G108400 [exp] 201 / 5e-63 AT5G51030 468 / 2e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014694 [exp] 315 / 2e-107 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 305 / 9e-104 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 304 / 2e-103 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 298 / 6e-101 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 297 / 2e-100 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10008413 [exp] 290 / 9e-98 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 288 / 3e-97 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 287 / 3e-96 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 290 / 1e-94 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10019546 [exp] 282 / 1e-94 AT2G24190 253 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.004G235500.3 pacid=42796437 polypeptide=Potri.004G235500.3.p locus=Potri.004G235500 ID=Potri.004G235500.3.v4.1 annot-version=v4.1 ATGGCAGAAGTAATTCCAACCAAAAGGATTGCAGTCGTTACGGGTGCAAATAAAGGTATTGGTTTAGAGATTTGCAGGCAGTTGGCATCTAAAGGGGTTT TGGTGGTTTTAACAGCTAGAGATGAGGAGAGGGGTCTTGAAGCTGTCAAGAGCCTCAAAGTTTCAGGTTTTTCTGATGTAGTTTTTCATCAACTTGATGT GGTGGACGATCTCAGTATTGCTTCCATGGCCAATTTCATCAGAAACCAATTCGGAAGGCTTGATATATTAGTGAACAATGCAGGCGTTCTTGGAAGCGGA GTTAAAGCAGAAGCCAGGAAGAACTTTAGATATAGTGTCGAAGATATTACCGGTCCAAATGCTGTATCACAAAAAAAATTTGTGAACCAAACTTATGAAA TAACAGTCAGTTGCCTGAGAACTAATTATTACGGAACCAAGCACCTAACTGAAGCGTTAATTCCTATCCTTGAGCAATCCAGTTCTGCAAGAATAGTCAA TGTCTCCTCCACCCTGGGGAAGCTTAAGTTTATTCCTAATGAAAAAGCCAAAAAGGAGCTAGGTGATGTTGATGGCCTGACAGAAGAAAAGGTTGAGAAG CTGGTGGAAGATTTCCTGGAGGATGTTAAGAATGATTTAGTGGAAACGAAACATTGGCCTCCCCTTTTTTCAGCTTATATAGTGTCCAAGGCTGCTCTTA ATGCCTACACAAGGATGTTGGCAAAGAAGTACCCCAAAATTGCAACCAACGCAGTCTGTCCAGGTTATACTAGCACAGACATCAATGATAGCACTGGGAT TTTCACTGTTGAAGAAGCTGCACGAGGTCCTGTTATGTTGGCTTTGATGCCTGATCATCAGCGCCCTTCTGGCTGCTTCTTTTTTCAGACAGAAATGTCA ACTTTTTGA
AA sequence Show only first row Show all	>Potri.004G235500.3 pacid=42796437 polypeptide=Potri.004G235500.3.p locus=Potri.004G235500 ID=Potri.004G235500.3.v4.1 annot-version=v4.1 MAEVIPTKRIAVVTGANKGIGLEICRQLASKGVLVVLTARDEERGLEAVKSLKVSGFSDVVFHQLDVVDDLSIASMANFIRNQFGRLDILVNNAGVLGSG VKAEARKNFRYSVEDITGPNAVSQKKFVNQTYEITVSCLRTNYYGTKHLTEALIPILEQSSSARIVNVSSTLGKLKFIPNEKAKKELGDVDGLTEEKVEK LVEDFLEDVKNDLVETKHWPPLFSAYIVSKAALNAYTRMLAKKYPKIATNAVCPGYTSTDINDSTGIFTVEEAARGPVMLALMPDHQRPSGCFFFQTEMS TF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235500 [exp]	0	1
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	1.00	0.8200
AT5G63380			AMP-dependent synthetase and l...		Potri.017G033600 [exp]	2.00	0.8167
AT1G54200			unknown protein		Potri.001G170500 [exp]	4.24	0.7497
					Potri.005G163950 [exp]	4.24	0.7959
AT4G18220			Drug/metabolite transporter su...		Potri.001G352200 [exp]	4.69	0.7281
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Potri.004G037800 [exp]	7.74	0.7025
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Potri.008G086000 [exp]	8.66	0.7566
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017700 [exp]	10.58	0.7393
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Potri.009G008200 [exp]	10.58	0.7232
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.009G133600 [exp]	10.77	0.7669

Compare expression of checked genes

Potri.004G235500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.