Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 285 / 2e-86 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G46730 224 / 9e-65 NB-ARC domain-containing disease resistance protein (.1) AT1G50180 223 / 3e-64 NB-ARC domain-containing disease resistance protein (.1) AT3G46530 220 / 3e-63 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT3G50950 220 / 3e-63 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT5G43470 214 / 1e-60 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 208 / 1e-58 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 204 / 2e-57 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 202 / 2e-56 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46710 200 / 5e-56 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013500 [exp] 895 / 0 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G009201 [exp] 556 / 0 AT1G50180 148 / 4e-40 NB-ARC domain-containing disease resistance protein (.1) Potri.001G134425 [exp] 411 / 1e-136 AT3G07040 347 / 6e-107 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 411 / 3e-134 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.002G216800 [exp] 401 / 1e-130 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G008666 [exp] 362 / 6e-124 AT3G07040 195 / 4e-57 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.011G165700 [exp] 379 / 3e-122 AT3G07040 471 / 1e-151 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 377 / 4e-121 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 377 / 5e-121 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 370 / 7e-119 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 320 / 1e-99 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 313 / 1e-96 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 308 / 5e-95 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 298 / 2e-91 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 294 / 1e-89 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 286 / 9e-87 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 284 / 4e-86 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 236 / 8e-71 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 223 / 8e-64 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.005G009900.1 pacid=42804852 polypeptide=Potri.005G009900.1.p locus=Potri.005G009900 ID=Potri.005G009900.1.v4.1 annot-version=v4.1 ATGGCCATGATCGCAGTGCAGGTGGTGCTCGAGAAACTGGCTTCCTTTGTAGCAGAAGAAACACGGTTCTTGGGAGGAGTTAGAGGGGGAATCGTTGAAC TGCTGGATGATTTGTATAGCATGAAATCTTTCCTTCAGGATGCGGAAGAAAGGAGTGAGAGTGATCAAGGACTGAGAGCCTGGGTCAAACAAGTGAGAGA TGTGGCTTATGATGCCGAGGACATTCTTGAAGAGTTCATGCTCCGGTTTGCTCCATCTCACGAGAGTGGTTTTATCCATCATCTTCGCAATTCATATCGT TCCATCCGTAAATTAAGTGCACGGCACCGGCTGGCAGTCCAGCTACAAAGCATTAAAGCAAGGGTGAAAGCCATTTCAGAGAGAAGAAATGCATTTTCTT TGAATAGGATAGATATGCCATCAACCTCCAGTGCTACCGTAGAGAAATGGCATGATCCCCGGTTAGCTGCTCTTTACTTAGATGAAGCTGATGTCGTGGG AATTGAGAACCCAAAACATCTACTGGTTTCGTGGCTTGTAGAAGGAGAAGAAAAGCTCTCCAGTATCTCTGTGGTTGGAATGGGTGGGTTGGGAAAAACA ACCCTCGTAAAGAAAGTCTATGACAGCCACCCCATCAGAAGAAGCTTTGATACCCATTCTTGGGTTACAGTTTCCAAATCGTTTGCATCCACGGAGCTCC TACGAGTTGCTCTGCAGGGGTTTCTGGTGACAGCAAACGAACCTGTTCCGGATAATTTGCAATCAATGACTGACTTCCAATTAATTGATGCTCTAAGAAA TTATCTATGGAGAAGGAGGTATGTCATTGTTTTGGATGATGTATGGAATGTAAACGCTTGGGAAACAATAAAGTATGCATTTCCTGATTGTAACTGTGGT AGTAGAATTATCTTCACTACACGTTTAAGTAACTTGGCTGAATCTATAGAGAACACTAGTCATGTTTATGAACTCCAAGCTTTATTAGAAAATGAAGCTT GGACCCTCTTTTGTATGAAAGCCTTCAGAGGGGAACATAAGGCTGTATGCCCTCCAGAACTGGAAGAGATGTCTCGAAATATCTTAAAGAAGTGTGAGGG ACTGCCACTTGCAATTGTAGCAATAGGAGGCCTACTGTCGAAGAAGAAAAACGGAGGTTTGGAATGGAAGAAAGTCCATGACTGCCTAGCTACAGAATTG AAAAGTAACGACGACCTTGGGAGTCTACGTAGAATACTTCAACTAAGTTACGATAATCTTCCTTACTACCTCAAACAGTGTTATTTGTATTTAAGTGTTT TTCCAGAGGATTATTTGATAAAAAGAATGAAGTTGATCCGGCTATGGATAGTTGAAAGGTTTGTGGAAGAGAAGCAAGGCTTTACAATGGAGGAAGTAGC AGAGGAACACCTAGTTCTAGCATTTTCCCAATCCTCCAAACTAGGTGGCCCTATGTTTTTTTTATTCCCCTTTGAATCAACCTCCAAAAAGTAA
AA sequence Show only first row Show all	>Potri.005G009900.1 pacid=42804852 polypeptide=Potri.005G009900.1.p locus=Potri.005G009900 ID=Potri.005G009900.1.v4.1 annot-version=v4.1 MAMIAVQVVLEKLASFVAEETRFLGGVRGGIVELLDDLYSMKSFLQDAEERSESDQGLRAWVKQVRDVAYDAEDILEEFMLRFAPSHESGFIHHLRNSYR SIRKLSARHRLAVQLQSIKARVKAISERRNAFSLNRIDMPSTSSATVEKWHDPRLAALYLDEADVVGIENPKHLLVSWLVEGEEKLSSISVVGMGGLGKT TLVKKVYDSHPIRRSFDTHSWVTVSKSFASTELLRVALQGFLVTANEPVPDNLQSMTDFQLIDALRNYLWRRRYVIVLDDVWNVNAWETIKYAFPDCNCG SRIIFTTRLSNLAESIENTSHVYELQALLENEAWTLFCMKAFRGEHKAVCPPELEEMSRNILKKCEGLPLAIVAIGGLLSKKKNGGLEWKKVHDCLATEL KSNDDLGSLRRILQLSYDNLPYYLKQCYLYLSVFPEDYLIKRMKLIRLWIVERFVEEKQGFTMEEVAEEHLVLAFSQSSKLGGPMFFLFPFESTSKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G009900 [exp]	0	1
AT1G50180			NB-ARC domain-containing disea...		Potri.005G008732 [exp]	2.00	0.8499
AT1G13480			Protein of unknown function (D...		Potri.008G109400 [exp]	11.13	0.8650
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G157000 [exp]	16.06	0.8438
AT5G65660			hydroxyproline-rich glycoprote...		Potri.019G055500 [exp]	26.03	0.8615
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.011G148100 [exp]	35.70	0.8047
AT3G18560			unknown protein		Potri.017G128700 [exp]	36.76	0.8252
AT5G24010			Protein kinase superfamily pro...		Potri.005G143700 [exp]	40.03	0.8431
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Potri.001G303700 [exp]	56.86	0.7913
AT5G36930			Disease resistance protein (TI...		Potri.006G283400 [exp]	69.28	0.7566
AT5G36930			Disease resistance protein (TI...		Potri.006G282600 [exp]	87.57	0.7615

Compare expression of checked genes

Potri.005G009900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.