Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LON_ARA_ARA.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26860 1429 / 0 LON1, LON_ARA_ARA lon protease 1 (.1) AT3G05790 1259 / 0 LON4 lon protease 4 (.1) AT3G05780 1167 / 0 LON3 lon protease 3 (.1) AT5G47040 330 / 2e-98 LON2 lon protease 2 (.1) AT1G07190 49 / 3e-07 unknown protein AT4G24710 48 / 3e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G64580 47 / 5e-05 EMB3144 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) AT3G16290 47 / 0.0001 EMB2083 embryo defective 2083, AAA-type ATPase family protein (.1) AT1G80350 44 / 0.0004 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G03000 44 / 0.0007 PEX6 peroxin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008900 [exp] 1781 / 0 AT5G26860 1467 / 0.0 lon protease 1 (.1) Potri.003G086000 [exp] 468 / 6e-150 AT5G47040 1461 / 0.0 lon protease 2 (.1) Potri.001G148400 [exp] 464 / 2e-148 AT5G47040 1460 / 0.0 lon protease 2 (.1) Potri.005G014500 [exp] 136 / 1e-32 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G059700 [exp] 49 / 2e-05 AT5G64580 1349 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Potri.014G133000 [exp] 47 / 6e-05 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.015G084900 [exp] 46 / 0.0001 AT4G24710 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G050600 [exp] 45 / 0.0002 AT3G16290 1159 / 0.0 embryo defective 2083, AAA-type ATPase family protein (.1) Potri.012G086400 [exp] 45 / 0.0003 AT4G24710 712 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031414 [exp] 1468 / 0 AT5G26860 1402 / 0.0 lon protease 1 (.1) Lus10010919 [exp] 1356 / 0 AT5G26860 1275 / 0.0 lon protease 1 (.1) Lus10040131 [exp] 457 / 8e-146 AT5G47040 1400 / 0.0 lon protease 2 (.1) Lus10001084 [exp] 335 / 3e-103 AT5G47040 994 / 0.0 lon protease 2 (.1) Lus10003009 [exp] 327 / 1e-96 AT5G47040 1420 / 0.0 lon protease 2 (.1) Lus10011038 [exp] 325 / 6e-95 AT5G47040 1413 / 0.0 lon protease 2 (.1) Lus10001083 [exp] 152 / 2e-41 AT5G47040 374 / 9e-125 lon protease 2 (.1) Lus10033496 [exp] 50 / 1e-05 AT5G64580 1057 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Lus10020879 [exp] 49 / 3e-05 AT5G64580 994 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Lus10040918 [exp] 47 / 9e-05 AT1G03000 1041 / 0.0 peroxin 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0178 [poplar] [flax] PUA PF02190 [poplar] [flax] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain CL0329 [poplar] [flax] S5 PF13541 [poplar] [flax] ChlI Subunit ChlI of Mg-chelatase
Representative CDS sequence Show only first row Show all	>Potri.005G017600.1 pacid=42804154 polypeptide=Potri.005G017600.1.p locus=Potri.005G017600 ID=Potri.005G017600.1.v4.1 annot-version=v4.1 ATGCTAAAGCTCCTGTCTTCCACTTCTCGCCAAATCCAAACCCACCTAACATCCCCATGTCTCCGAGTCACCACCGAGTCACAACCGAGTTCCTTTCTAA AGTCTCTGAGTTCACTCACGGGTTTGACTCAGAGGAACCATAAAAGTCTTAGTTTTTATCAAAGAGCCTTCTTTTGCTCTGGTTCTTCTTCCGGCGATGG CGGCGACGGAGGTGGGTTTGTTGAGGTCGAGGTCAGGAGTGGTGCCAGCGATACAGAAGCTGAAGTTGGTGCTGCGGACGCTAGTAATTCCTCGGCTATT GTACCTACTAATCCTAGACCAGAGGATTATTTAACGGTGTTGGCATTGCCATTACCACACAGACCTCTTTTTCCTGGTTTCTACATGCCAATATATGTAA AGGATCCTAAATTATTGGCAGCTTTACAAGAAAGCAGAAAAAGGCAAGCCCCATATTGCGGTGCTTTTCTTCTTAAAGATGAGCCAGGTACTGATCCCAG CGTTGTAACTGGTTCTGAATCCGAGAAAAATATAGGTGATCTTAAGGGAAAGGATTTGTACAATCATCTGCATGAAGTTGGCACACTTGCTCAGATAACA ACCATTCAAGGAGACCAGGTTATCCTTATTGGTCATCGGCGACTTCGGATAACTGAAATGGCCAGTGAGGATCCATTAACTGTTAAAGTTGATCATCTCA AGGACAAACCATATAACAAGGATGATGATGTCATAAAGGCAACATCTTTTGAGGTTATATCAACCCTAAGAGATGTTCTGAAGACAAGTTCACTTTGGAG AGATCATGTTCAAACATATACACAGCATGTAGGTGACTTTAACTTTCCAAGGTTAGCAGATTTTGGGGCTGCAATATCAGGCGCGAGCAAGTTGCAGTGC CAAGAAGTTCTTGAAGAGCTGGATGTGCATAAACGTTTGAAACTAACTCTGGAGTTGGTGAAGAAAGAAATTGAAATCAGCAAGATCCAGGAATCAATTG CAAAAGCAATTGAAGAGAAGATTAGTGGTGAGCAGCGCCGCTATTTGTTGAATGAACAACTCAAGGCCATAAAGAAGGAACTGGGATTGGAGGCAGATGA CAAAACAGCACTTTCTGCAAAGTTTAGGGAAAGGCTTGAACCAAACAGGGATAAAATCCCAGTGCATGTTTTGCAAGTTATAGAAGAAGAGCTCACGAAA CTGCAGCTTTTAGAGGCTAGTTCAAGTGAATTTAATGTCACTCGTAATTATTTAGATTGGTTGACTGCGTTGCCTTGGGGAAGTTACAGTGATGAGAATT TTGATGTTCTTCGGGCACAGAAGATTCTTGATGAAGATCATTATGGATTAACTGATGTTAAGGAAAGGATATTGGAATTTATAGCTGTTGGAAAACTCAG AGGAATTTCTCAAGGAAAAATCATCTGTCTATCTGGTCCACCTGGAGTGGGTAAAACTAGCATCGGGCGTTCAATTGCACGTTCATTGAACAGAAAGTTC TTTCGGTTTTCAGTAGGAGGGTTGTCTGATGTTGCTGAAATTAAGGGGCATCGTCGAACCTATATTGGTGCAATGCCAGGAAAGATGGTGCAGTGCTTGA AAAATGTGGGAACTGCTAACCCTCTTGTTCTGATTGATGAGATTGACAAGTTGGGAAGAGGGCACTCCGGCGATCCAGCAAGTGCTTTATTGGAGTTGCT TGACCCAGAGCAAAATGCCAATTTTCTGGACCACTACCTTGATGTTCCAATTGATCTATCAAAGGTTCTCTTTGTGTGCACAGCAAATGTTGTGGACATG ATACCCAACCCCCTTTTGGATAGGATGGAGGTAATTGCTATTGCTGGGTATATTACAGATGAGAAAGTGCACATTGCCAGAGATTATTTGGAGAAGGCTA CACGCGAAGCATGTGGCATCAAACCTGAGCAGGTTGAAGTAACTGATGCTGCTCTTCTTGCCCTGATAGAGAATTATTGCCGAGAAGCAGGGGTTCGTAA TCTTCAAAAGCACATTGAAAAAATTTATCGCAAGATTGCACTGCAACTCGTGCGGCAAGGAGCGATAATTGAATCTGCAGTTCCTGTGGCAGAACTAAAT GAAGCAAAAGTTGAATGTGTTGAAACCTCCACAGAATCAGTAGATGTTAGCAGTAACAAACAAAATAATGAAACCCCTGAAGAAGCTGAAATTGTTCACA CAGGTCAAACCCTTGAAGAAGCTGAGATTGTGCAGATGAATCCCCAACCTGATGACTTACAGAGTTCCACTGATCAACCTACTGATTCAAAGGATACAGC TGAAACTGAGAAAATTGAGGAAAGTGAAGTGACTAAGGCCATTGAGAAGGTGCTAATTGACACATCAAACCTAGTTGATTTTGTTGGCAAACCTGTTTTC CATGCTGAGCGCCTCTACTATCAAACTCCAATTGGGGTTGTGATGGGCCTTGCATGGACTGCAATGGGTGGGTCCACCTTGTATATAGAGACCACTCAGG TTGAGCAAGGAGATGGGAAAGGAGCCCTTAATCTCACTGGTCAACTTGGAGAAGTAATGAAAGAAAGTGCCCAAATTGCTCACACAGTTGCAAGAGCGAT ATTGCTTGAGAAAGAACCAGATAACCTCTTTTTTGCTAATACCAAGCTTCACCTTCATGTCCCTGCTGGGGCCACCCCAAAAGATGGACCTAGTGCTGGT TGCACCATGATCACATCCTTGCTATCTCTTGCCATGAAGAAGCCTGTCAGAAAAGATCTAGCAATGACTGGGGAAGTTACACTGACAGGAAAAATTCTTC CTATTGGTGGGGTCAAGGAGAAAACATTAGCCGCGAGAAGAAGTGATGTGAAGACCATCATATTCCCATCAGCAAACAGGCGAGATTTTGACGAGCTTTT GCCTAATGTAAAAGAAGGCCTTGATGTCCACTTTGTAGATGACTACAGCCAGATATTTGAGTTAGCCTTTGGATACGAGGAGAATGAAAACAAGTAA
AA sequence Show only first row Show all	>Potri.005G017600.1 pacid=42804154 polypeptide=Potri.005G017600.1.p locus=Potri.005G017600 ID=Potri.005G017600.1.v4.1 annot-version=v4.1 MLKLLSSTSRQIQTHLTSPCLRVTTESQPSSFLKSLSSLTGLTQRNHKSLSFYQRAFFCSGSSSGDGGDGGGFVEVEVRSGASDTEAEVGAADASNSSAI VPTNPRPEDYLTVLALPLPHRPLFPGFYMPIYVKDPKLLAALQESRKRQAPYCGAFLLKDEPGTDPSVVTGSESEKNIGDLKGKDLYNHLHEVGTLAQIT TIQGDQVILIGHRRLRITEMASEDPLTVKVDHLKDKPYNKDDDVIKATSFEVISTLRDVLKTSSLWRDHVQTYTQHVGDFNFPRLADFGAAISGASKLQC QEVLEELDVHKRLKLTLELVKKEIEISKIQESIAKAIEEKISGEQRRYLLNEQLKAIKKELGLEADDKTALSAKFRERLEPNRDKIPVHVLQVIEEELTK LQLLEASSSEFNVTRNYLDWLTALPWGSYSDENFDVLRAQKILDEDHYGLTDVKERILEFIAVGKLRGISQGKIICLSGPPGVGKTSIGRSIARSLNRKF FRFSVGGLSDVAEIKGHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHSGDPASALLELLDPEQNANFLDHYLDVPIDLSKVLFVCTANVVDM IPNPLLDRMEVIAIAGYITDEKVHIARDYLEKATREACGIKPEQVEVTDAALLALIENYCREAGVRNLQKHIEKIYRKIALQLVRQGAIIESAVPVAELN EAKVECVETSTESVDVSSNKQNNETPEEAEIVHTGQTLEEAEIVQMNPQPDDLQSSTDQPTDSKDTAETEKIEESEVTKAIEKVLIDTSNLVDFVGKPVF HAERLYYQTPIGVVMGLAWTAMGGSTLYIETTQVEQGDGKGALNLTGQLGEVMKESAQIAHTVARAILLEKEPDNLFFANTKLHLHVPAGATPKDGPSAG CTMITSLLSLAMKKPVRKDLAMTGEVTLTGKILPIGGVKEKTLAARRSDVKTIIFPSANRRDFDELLPNVKEGLDVHFVDDYSQIFELAFGYEENENK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	0	1	Pt-LON_ARA_ARA.2
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	1.00	0.8688
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	1.73	0.8582
AT1G10490			Domain of unknown function (DU...		Potri.005G085600 [exp]	3.46	0.8508
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.013G008900 [exp]	4.47	0.8399	Pt-LON_ARA_ARA.1
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.002G232600 [exp]	6.32	0.8021
AT5G17270			Protein prenylyltransferase su...		Potri.004G080800 [exp]	7.74	0.8244
AT1G26460			Tetratricopeptide repeat (TPR)...		Potri.010G159100 [exp]	8.06	0.7803
AT1G24267			Protein of unknown function (D...		Potri.003G169200 [exp]	9.16	0.7128
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	10.24	0.7226
AT5G14580			polyribonucleotide nucleotidyl...		Potri.001G347900 [exp]	10.58	0.8113

Compare expression of checked genes

Potri.005G017600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.