Plant FIBer expression Database

Potri.005G029000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05380 814 / 0 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
AT3G21430 669 / 0 MYB ATALY3 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
AT5G27610 528 / 3e-171 MYB ATALY1 ARABIDOPSIS THALIANA ALWAYS EARLY 1, ALWAYS EARLY 1, DIRP ;Myb-like DNA-binding domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G020500
[exp]
1743 / 0 AT3G05380 807 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Potri.008G216600
[exp]
738 / 0 AT3G21430 1006 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Potri.010G023201
[exp]
736 / 0 AT3G21430 939 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033961
[exp]
566 / 0 AT3G21430 941 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Lus10029910
[exp]
484 / 2e-154 AT3G05380 549 / 1e-179 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Lus10004489
[exp]
484 / 8e-154 AT3G05380 558 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Lus10002879
[exp]
397 / 3e-120 AT3G21430 764 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF00249 Myb_DNA-binding Myb-like DNA-binding domain
CL0123 PF06584 DIRP DIRP
Representative CDS sequence
>Potri.005G029000.1 pacid=42804787 polypeptide=Potri.005G029000.1.p locus=Potri.005G029000 ID=Potri.005G029000.1.v4.1 annot-version=v4.1
ATGGCCCCAGCAAGGAAAAAAAGTGTGAATAAGAGGTTTCTGAATGAGGTATCACCTGAAAAAGAAGTCAAGAGTTCAGGCAAAAGTAAACAGCAGGTGA
ATGGGAAGAAGAAATTGTCTGATAAGTTAGGACCTCAATGGAAGAAGGCAGAACTTGAACGATTTTACAAAGCATATCGGGACAATGGAAAGAACTGGAA
GAAAGTAGCTGCTGAAGTGCGCAACAGATCTGTGGAAATGGTGGAGGCCCTTTACAATATGAATCGGGCGTACTTGTCTCTTCCAGAGGGAACAGCTTCT
GTAGTTGGGCTTATAGCTATGATGATTGATCACTATAGTGTTCTGGAAGCAAGTGATAGTGAACGAGAAAGCAATGAGATGCCTGGAGTACTCAGGAAGC
TTCAGAAACACAAGCGGCCAAAAGTGCTGCTTAGTGCATCAAAAGAAGATCCCCAACATTTTCGCATGGTTGGATCAACTGATGGATGCTTATCATTATT
AAAAAGAGGATGTGGCCGTCCACTTCATGCAGTTGGGAAAAGGACACCTCGCTTCCCTGTTTCATATCTGCGTAAGAAAGATGATGGAGAAAATTATGTT
TCACCAAAGAAGAAGCGCAGAAAGTTAGAGATCAATGCCGATGATAATGACGATGAGCATGCTGCTGTACTGGCATTAACCGAGGCATTGCAGAGAGTAG
ACTCTCCCCAAATGTCTCAAACACCCTGTAGAAGAACAGAAAATATGAAATCATCACCTGTTCAAAGCTGGGATAGGATGTCTGAATCATCTCCAGCAAA
TCTTTGTGATGCTTCCATAAATGAAAATTGGTCTGAAAGTGGCATAGGACGTGGGGGGCCTGATCTTGCTTGTGTGAGGGATGCAAGCTCCTTGGCGGAA
ATGGAAGGTATAGGTACTGTAGAAGTTCATCGAAAAGGCAAGAAGTTCTATGGAAATAAAATTAAAGTTGAGAAGATTGGGAACAGTCAGTCTGATGATG
GTGGAGAAGCGTGCAGTGGCACTGAAAAAGAGCAAAAGGCCAGCACTTTGAAGGGAAAAGTTGAAATTGAGATGTCAAATGCAAAAATTGATGAGACCTT
TCACCGGAGCCAAAGGAAGAGAAGCAAGAAACTTTTTTCAGACGATGAACCTGCTGACTTGATTGGTCTTCAAACGTTGGCTCTTGTTTCTGCAATGGAA
TTTGAATCATCTTGCCTGTTGGATGACGAAAGAACCACACAAAATGGGGACCACAAGAGTAGCATACCTGAATCTGCATCTACTAGTCATCATAGAGATA
AAACTAAATTCTCAAGGCAGAAAGAAAAGGCAACAAGTGATGTTGAGGGTGCAACCTCAAGAAAATCTAAGCTCGGAAGATATCCACAAAGTTCTGCTAA
ATCAGTCTCTGAAGCAAATAAACGGCCTCAGTCCATCAGCAATGATATGCTGAAAAGAAAACGCGAGGCTTTGGTAGCAAAGGTTCTGGATGAAGAGGAG
AATACATCTGTGGTTAAAGGAAAACACAGTGCTCAAATTTCTTCTCCTTCAAAACAATTGAAATCATTAAAATTGCCAGATGGTTCTTTCAGTGGTGATC
AGAAAACTATATCAAATGATCTAGCAACGTCAACTGAACAAGTTCCTGTTGCAAGCCAAGTTATCTTACCAACCAGAAAAACAAGTAGACGCAAGATGGA
TCTAAAGAGAGCAATGATTCCAAAGGTGAACGTTCTGAAGAATCAAATTAGTAAATACTCCATCTCCCTACAAGATGAAGCAACCCATCTAAAGGACAAG
CTTTCTTGTGTAGTATCATCTCCTATGGTTCGCAGATGGTGTACATATGAATGGTTTTACAGTGCAGTTGACTACCCTTGGTTTTCTAGAAGGGAGTTTG
TTGAATATTTGAATCATGTTGGACTTGGGCACATTCCAAGGCTGACTCGAGTAGAATGGGGTGTCATAAGAAGTTCTCTTGGCAAACCTCGGAGGTTTTC
TGAGCGTTTTTTACACGAAGAAAGAGAGAAACTCCAGCAATATAGAGAATCTGTGAGAAAACATTATATGGAGCTTCGTACTGGTTTAAGGGAAGGACTT
CCAACAGATTTAGCAAGACCTTTATCAGTTGGACAGCGAGTAATTGCTATTCATCCCAAAACAAGAGATCTTCATGATGGAAGTGTGCTCACCGTGGATC
ATGACCGGTGCAGGGTTCAGTTTGACCGTGCTGAGTTAGGGGTTGAATTTGTCAAGGATATAGATTGCATGCCTTCAAATCCGCTGGATAACATGCCAGA
AGCTCTTAGGAGACAGAAAACCTCTGTTCTGCCCAAGGAACTGCCAGTGAATGGGAAGTCAAGCATCGGAGAGTTCACTGCAATTGAAAAACTAAGGAAT
GCACAGAGTCCCATGAATGCTTTGATGAAGCAGGCACAAGTTGAGGCAAACCATGCCAACCTTCTTGCCAAGGCAACATCCACTGACATTGTCAATGCAC
AAGGAGCCTGTGGTCAACCTTCTAGGGTATCACAGATCCAACTGAAGAAATATGATATTCGAGCTCTGTCTGAGCTGAATTGTGCTCTTGATAAAAAGGC
CTCTTCTGCTTTACTCAATGTGCCTGCTTGGCTGAAACCTCCAGCCAATTCCTGTTTCTCTGGTATGCTAAGACCGCAAAGTTCTTGTGTTTCTCAAGAT
TCAGGATCTGCTGTTCTCGAGATTGTTAGAGGGTTGAGATTAAAGGCACATATTATGGTAGATGCTGCTGTCCAGGCAATTTCATCCATGAAAGAAGGGG
AAGATGCCTTTGCGAGAATCGGAGAGGCATTAGATTCTATGGATAGAAGTCATTTGGGATCAGAATCTAGGGCACAAATGATCAGGTCCCAGGAGGAGGC
CAATACCGGTTTAGGCCTTCAAAATCAGTTGATTCCCAGCACACCAGAGCCTCAGGTTAACTGCAATGTATCTGGGCCTCAATCAAATGATTCTGAAAAA
ATTGAGACAGCAATTCCTTCAGAGCTCATATCATCATGTGTCGCTGCTTTGCTCATGATACAGACATGCACTGAACGACAGTATCCCCCATCTGATGTGG
CCCAGATAATTGATTCTGCTGTTACTAGCTTGCATCCATGCTGTCCACAAAATCTGCCAATATATAGAGAGATACAAATGTGCATGGGAAGAATAAAGAC
GCAAATACTGGCTCTAATACCAACATGA
AA sequence
>Potri.005G029000.1 pacid=42804787 polypeptide=Potri.005G029000.1.p locus=Potri.005G029000 ID=Potri.005G029000.1.v4.1 annot-version=v4.1
MAPARKKSVNKRFLNEVSPEKEVKSSGKSKQQVNGKKKLSDKLGPQWKKAELERFYKAYRDNGKNWKKVAAEVRNRSVEMVEALYNMNRAYLSLPEGTAS
VVGLIAMMIDHYSVLEASDSERESNEMPGVLRKLQKHKRPKVLLSASKEDPQHFRMVGSTDGCLSLLKRGCGRPLHAVGKRTPRFPVSYLRKKDDGENYV
SPKKKRRKLEINADDNDDEHAAVLALTEALQRVDSPQMSQTPCRRTENMKSSPVQSWDRMSESSPANLCDASINENWSESGIGRGGPDLACVRDASSLAE
MEGIGTVEVHRKGKKFYGNKIKVEKIGNSQSDDGGEACSGTEKEQKASTLKGKVEIEMSNAKIDETFHRSQRKRSKKLFSDDEPADLIGLQTLALVSAME
FESSCLLDDERTTQNGDHKSSIPESASTSHHRDKTKFSRQKEKATSDVEGATSRKSKLGRYPQSSAKSVSEANKRPQSISNDMLKRKREALVAKVLDEEE
NTSVVKGKHSAQISSPSKQLKSLKLPDGSFSGDQKTISNDLATSTEQVPVASQVILPTRKTSRRKMDLKRAMIPKVNVLKNQISKYSISLQDEATHLKDK
LSCVVSSPMVRRWCTYEWFYSAVDYPWFSRREFVEYLNHVGLGHIPRLTRVEWGVIRSSLGKPRRFSERFLHEEREKLQQYRESVRKHYMELRTGLREGL
PTDLARPLSVGQRVIAIHPKTRDLHDGSVLTVDHDRCRVQFDRAELGVEFVKDIDCMPSNPLDNMPEALRRQKTSVLPKELPVNGKSSIGEFTAIEKLRN
AQSPMNALMKQAQVEANHANLLAKATSTDIVNAQGACGQPSRVSQIQLKKYDIRALSELNCALDKKASSALLNVPAWLKPPANSCFSGMLRPQSSCVSQD
SGSAVLEIVRGLRLKAHIMVDAAVQAISSMKEGEDAFARIGEALDSMDRSHLGSESRAQMIRSQEEANTGLGLQNQLIPSTPEPQVNCNVSGPQSNDSEK
IETAIPSELISSCVAALLMIQTCTERQYPPSDVAQIIDSAVTSLHPCCPQNLPIYREIQMCMGRIKTQILALIPT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05380 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EA... Potri.005G029000
[exp]
0 1
AT3G05380 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EA... Potri.013G020500
[exp]
3.16 0.8848
AT5G17910 unknown protein Potri.019G044500
[exp]
4.24 0.8695
Potri.001G298233
[exp]
5.19 0.8680
AT4G39420 unknown protein Potri.005G086100
[exp]
8.66 0.8570
Potri.001G298266
[exp]
9.16 0.8528
AT1G18950 DDT domain superfamily (.1) Potri.012G072200
[exp]
9.16 0.8675
AT3G12640 RNA binding (RRM/RBD/RNP motif... Potri.009G063800
[exp]
9.38 0.8281
Potri.003G027318
[exp]
11.31 0.8343
AT2G40950 bZIP BZIP17 Basic-leucine zipper (bZIP) tr... Potri.006G034500
[exp]
12.96 0.8075
AT4G27220 NB-ARC domain-containing disea... Potri.011G124000
[exp]
16.30 0.8402

Potri.005G029000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.