Plant FIBer expression Database

Potri.005G030318 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69550 672 / 0 disease resistance protein (TIR-NBS-LRR class) (.1)
AT5G17680 573 / 2e-180 disease resistance protein (TIR-NBS-LRR class), putative (.1)
AT4G12010 525 / 2e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1)
AT1G27170 514 / 1e-157 transmembrane receptors;ATP binding (.1.2)
AT2G14080 498 / 5e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1)
AT3G25510 508 / 1e-151 disease resistance protein (TIR-NBS-LRR class), putative (.1)
AT5G44510 490 / 1e-150 TAO1 target of AVRB operation1 (.1)
AT4G16890 489 / 4e-149 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
AT1G27180 491 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1)
AT5G11250 474 / 7e-145 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G030700
[exp]
1634 / 0 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
Potri.005G031101
[exp]
1472 / 0 AT5G17680 557 / 8e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.004G088500
[exp]
1417 / 0 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
Potri.005G031899
[exp]
1301 / 0 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1)
Potri.019G069500
[exp]
669 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.019G069600
[exp]
652 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.019G070700
[exp]
651 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.019G070393
[exp]
644 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.019G070651
[exp]
629 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018616
[exp]
583 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10039850
[exp]
575 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10029722
[exp]
541 / 2e-170 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10029628
[exp]
525 / 4e-161 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10030839
[exp]
503 / 4e-155 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Lus10041060
[exp]
484 / 1e-147 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10005588
[exp]
482 / 2e-147 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10014207
[exp]
475 / 5e-145 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10003749
[exp]
472 / 7e-143 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10026201
[exp]
464 / 4e-141 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00931 NB-ARC NB-ARC domain
CL0173 STIR PF13676 TIR_2 TIR domain
Representative CDS sequence
>Potri.005G030318.1 pacid=42802317 polypeptide=Potri.005G030318.1.p locus=Potri.005G030318 ID=Potri.005G030318.1.v4.1 annot-version=v4.1
ATGGCTTCCACTTCTTCTCCCACTACTCCATATTTGAAGCTTGATGTGTTCCTCAGTTTTAGAGGCACAGACACCCGCAATAGTTTCACCAGTCATCTTT
ATGATGCTTTGCAGCGAAACCAAATTGATGCTTACATCGATAATAAACTTGATGGAGGAGAAAAGATCGAGCCTGCCCTCTTGGAAAGGATTGAGGAGTC
GTTTATTTCGCTAGTCATTTTCTCTGAAAATTATGCAGATTCTACTTTCTGTTTGAGGGAACTCTCCAAGATTCTTGAGTGCATGGAGACCAAACAACAG
ATGGTCTTACCAGTTTTTTACCGACTTGATCCAAGCCATGTTCAAAATCTGACTGGGAGCTATGGAGATGCACTTTGCAAGCATGAAAGAGATTGCAGTT
CTGAAGAAGTAGAGAGTTGGAGACGTGCTTCGAAAGAAATAGCTAATCTCAAGGGCTGGGATTCAAACGTCATTAAGGATGAGACCAAGCTAATTCAGGA
AATCGTTACTGACATTCAAAAGAAATTGAACCATGAGCTGTCACCCTCATTTGATTCAAAACGCCTTGTTGGAATGAAATCACGCGTTGAAGACATCGAA
TCATTACTATCCTTTGGATCAACCGGTGTGCTCATCGTGGGAATCTGGGGGATGGGTGGTATAGGTAAGTCCACAACGGCTGAAACTGTGTATCATCGAA
ACTGTAGTAAATTTGAAGGCCATTGCTGTTTCCAAGATGTTAGGGAAGAATCACGGAAGCATGGAGTAGATCATGTACGACAGGAAATTCTTGGCAAGGT
ATTAGAGAAGAATGATCTCAAAATACACGGAAAAGTGCTACCCTCGGCCATTAAGCGAATGCTTCAAAGAAAAAAAGTCCTCATAGTTCTTGATGATGTC
AATGATCCACAACATTTAAAATATTTACTAGGAGAGGATGGTTTGTTTGGCCAAGGAAGTAGAATCATTGTGACAAGTAGAGATAGGCGAGTTCTTGAAA
ATGCATGTGATGAAGACAGAATTTACGAGGTTAAAATTTTAGATGAAGACGATGCACTTCGACTCTTCAGCTTACATGCCTTTAAACAAGATCGTCCCAT
AGAAGGATATACTGGGCTTTCAAAAACTGTGGTAAGCTGTGTTAAGGGCATTCCATTAGTTCTCGAGGTTTTAGGTGGCAATCTATGCAATAAAAGGAGT
GTTGAATACTGGGAAAGTAAGGTGGCACAGCTAAGAACAAATGGTGGCGAGGACATTAAGAAACATTTGGAAATGTGCTATCATGAATTAGATCAGACAG
AAAAGAAAATATTTCTTGATATAGCATGTTTCTTTGGACGGTGCAAGAAGGATTTTCTCCAACAAACACTAGATCTTGAAGAAAGAAGTGGGATAGATCG
TCTCGCTGATATGTGTCTCATAAAAATTGTTCAAGACAAGATCAAGATGCATGATGTGCTCCTAAAACTAGGGAAAAAAATTGTCCTCCAAGAAAACGTT
GACCCTAGAGAACGTAGCAGGTTGTGGGAGGCTGATGATATCTATCGTGCATTAACAACTCAGGGGACTGGATCAAAAGTGGAAAGCATATCCCTCATCT
TGGATTCAACTAAAGAATTGACATTAAGTCCTACAGCATTTGAAGGGATGTATAATTTAAGATTGCTCAAAATCTATTACCCACCTTTCTTAAAGGATCC
CTCAAAGGAGCAAATTATGAATCGAAAGAGGGTCGGAATCCACCTTCCACGAGGGCTTCACTTTCTTTCAAGTGAGCTAAGGTTTCTCTACTGGTATAAT
TACCCTTTGAAATCCTTTCCATCAATTTTTTTCCCTGAGAAACTTGTTCAACTTGAAATGCCTTGTTGCCAGCTTGAACAACTTTGGAATGAAGGCCAGC
CACTTGAGAAGTTGAAATCTCTTAAATCACTTAATCTTCATGGTTGCTCAGGACTAGCAAGTCTACCACATAGTATTGGCATGTTGAAATCTCTTGACCA
GCTTGATCTTAGTGGTTGCTCAAGTCTAACAAGTCTACCGAACAACATTGACGCGTTAAAATCTCTAAAATCGCTTAATCTTAATGGTTGCTCAAGACTA
GCAAGTTTACCAAATAGCATTGGTGTGTTAAAATCTCTTGACCAGCTTGATCTTAGTGGTTGCTCAAGACTAGCAAGTCTACCAGACAGTATTGGCGCGT
TGAAATCTCTTAAATCGCTTAATCTTAGTGGTTTCTCAAGACTAGCAAGTCTACCAAATAGCATTAGCATGTTGAAATCTCTTGACCAATTTGATCTTAG
TGATTGCTCAAGACTAGTAAGTCTACTAGAGAGCATTGGCGCGTTCAAATCTCTTAAATCACTTAATCTTAGTGGTTGCTCAAGACTAGCAAGTTTACCA
GATAAAATTGGTGAGTTGAAATCTCTTAAATTGCTTAAACTTCATGGTTGCTCAGGACTAGCAAGTTTACCAGACAACATTGGCGAGTTGAAATCTCTTA
CATCGCTTAATCTTAGTCGTTGCTCAGGACTAGCAAGTCTACCTGACAGCATTGGGGTGTTGAAATGTCTTGCTAAGCTTCACCTTACTGGTTGCTCAGG
ACTAGCAAGTCTACCAGACAGCATTGACAAATTGAAATGTCTTGATACGCTTCATCTTAGTGGTTGCTCAAGACTAGCAAGTCTACCCAACAACATTGGC
GCATTGAAATCTCTTTACCAGCTTGATCTTAGTGGTTGCTCAAGACTAGAAAGTCTACCCGACAGCATTGGAGGGTTGAAATGTCTTACTAAGCTTCACC
TTACTGGTTGCTCAGGACTAACAAGTCTACCAGACAGCATTGACAGGTTGAAAAGTCTTGATACACTTCATCTTAGTGGTTGCTCAGGACTAGCAAGTCT
ACCAAACAACATTAACAGGTTGAACTATCTTATTGTGCTTAATCTTTGTGGTTTCTCAAGACTAGCAAGTCTACCAAACAGCATTGGCGAGTTGAAATCT
CTTAAATTGCTTCATCTTAGTGGTTGCTCAAGACTAGCAAGTCTACCAGATAGAATTGACGAGTTGAAATCTCTTAAATCGCTTAATCTTAATGGTTGCT
CAGGACTAGCAAGTCTACCAGACAGAATTGGGGAGTTGAAATCTCTTGAATGGCTTAATCTTCATGATTGCTCAGGACTAACAAGTCTACCAGACAGAAT
TGTCGAGTTGAAATCTCTTAAATCCCTTAATCTTAATGGTTGTTTAGGACTAGAAAGTCTACCAGACAGCATTGGCGAGTTGAGATGTCTTACTATGCTT
AATCTTAGTGGTTGCTTAAAACTAACAAGTCTACCCGACAGCATTGGCATGTTGAAATGTCTTTATGCGCTTCACCTTACTGGTTGCTCAGGACTAGAAA
GTCTACCAGACAGCATTGACGAGTTGAGATGTCTTACTACGCTTGATCTCAGTGGTTGCTTAAAACTAGCGAGTCTTCCAAACAACATCATTGATCTTGA
ATTTAAAGGACTTGACAAACAGCGTTGTTATATGCTGAGTGGATTCCAGAAAGTAGAAGAAATTGCATCATCCACCTATAAATTGGGCTGCCATGAATTT
TTAAATTTGGGAAATTCTCGTGTGTTAAAAACTCCAGAGAGATTAGGCTCTTTGGTGTGGCTAACAGAATTGAGATTATCTGAGATTGATTTTGAGAGGA
TACCTGCAAGCATCAAGCACCTTACTAAGCTAAGTAAACTCTATTTAGATGATTGCAAGCGGCTTCAATGTTTACCAGAGCTTCCATCGACTCTACAAGT
TTTAATCGCATCAGGTTGCATCTCTCTAAAATCTGTAGCAAGTATATTCATGCAAGGTGATAGAGAATATGAAGCTCAGGAATTCAATTTCTCTGGATGC
CTCCAACTGGATCAGAATTCACGCACTAGAATTATGGGTGCTACCCGTTTACGAATTCAACGCATGGCAACATCATTATTTTATCAGGAATATCATGGTA
AGCCCATTAGAGTTCGGTTGTGTATTCCTGGGTCGGAAGTCCCGGAATGGTTCAGTTATAAAAATAGAGAAGGATCGTCAGTAAAAATCCGGCAACCAGC
TCATTGGCATCGTCGTTTCACTTTATGCGCTGTTGTTTCATTTGGCCAAAGCGGGGAAAGGCGTCCCGTTAATATTAAATGTGAATGCCATTTGATAAGC
AAAGATGGAACCCAGATTGATCTCAATTCCTACTTCTACGAAATATATGAAGAAAAGGTGAGGAGTTTATGGGAAAGGGAGCATGTGTTCATTTGGAGTG
TCCACTCTAAGTGCTTTTTCAAGGAGGCCTCGTTTCAATTCAAATCACCATGGGGAGCTACTGATGTGGTGGTTGGGTGTGGAGTCCATCCACTGTTGGT
CAACGAGCCTGAGCAACCAAACCCTAAAACAGATGGAAAATGCTTGACAAACTCTTAA
AA sequence
>Potri.005G030318.1 pacid=42802317 polypeptide=Potri.005G030318.1.p locus=Potri.005G030318 ID=Potri.005G030318.1.v4.1 annot-version=v4.1
MASTSSPTTPYLKLDVFLSFRGTDTRNSFTSHLYDALQRNQIDAYIDNKLDGGEKIEPALLERIEESFISLVIFSENYADSTFCLRELSKILECMETKQQ
MVLPVFYRLDPSHVQNLTGSYGDALCKHERDCSSEEVESWRRASKEIANLKGWDSNVIKDETKLIQEIVTDIQKKLNHELSPSFDSKRLVGMKSRVEDIE
SLLSFGSTGVLIVGIWGMGGIGKSTTAETVYHRNCSKFEGHCCFQDVREESRKHGVDHVRQEILGKVLEKNDLKIHGKVLPSAIKRMLQRKKVLIVLDDV
NDPQHLKYLLGEDGLFGQGSRIIVTSRDRRVLENACDEDRIYEVKILDEDDALRLFSLHAFKQDRPIEGYTGLSKTVVSCVKGIPLVLEVLGGNLCNKRS
VEYWESKVAQLRTNGGEDIKKHLEMCYHELDQTEKKIFLDIACFFGRCKKDFLQQTLDLEERSGIDRLADMCLIKIVQDKIKMHDVLLKLGKKIVLQENV
DPRERSRLWEADDIYRALTTQGTGSKVESISLILDSTKELTLSPTAFEGMYNLRLLKIYYPPFLKDPSKEQIMNRKRVGIHLPRGLHFLSSELRFLYWYN
YPLKSFPSIFFPEKLVQLEMPCCQLEQLWNEGQPLEKLKSLKSLNLHGCSGLASLPHSIGMLKSLDQLDLSGCSSLTSLPNNIDALKSLKSLNLNGCSRL
ASLPNSIGVLKSLDQLDLSGCSRLASLPDSIGALKSLKSLNLSGFSRLASLPNSISMLKSLDQFDLSDCSRLVSLLESIGAFKSLKSLNLSGCSRLASLP
DKIGELKSLKLLKLHGCSGLASLPDNIGELKSLTSLNLSRCSGLASLPDSIGVLKCLAKLHLTGCSGLASLPDSIDKLKCLDTLHLSGCSRLASLPNNIG
ALKSLYQLDLSGCSRLESLPDSIGGLKCLTKLHLTGCSGLTSLPDSIDRLKSLDTLHLSGCSGLASLPNNINRLNYLIVLNLCGFSRLASLPNSIGELKS
LKLLHLSGCSRLASLPDRIDELKSLKSLNLNGCSGLASLPDRIGELKSLEWLNLHDCSGLTSLPDRIVELKSLKSLNLNGCLGLESLPDSIGELRCLTML
NLSGCLKLTSLPDSIGMLKCLYALHLTGCSGLESLPDSIDELRCLTTLDLSGCLKLASLPNNIIDLEFKGLDKQRCYMLSGFQKVEEIASSTYKLGCHEF
LNLGNSRVLKTPERLGSLVWLTELRLSEIDFERIPASIKHLTKLSKLYLDDCKRLQCLPELPSTLQVLIASGCISLKSVASIFMQGDREYEAQEFNFSGC
LQLDQNSRTRIMGATRLRIQRMATSLFYQEYHGKPIRVRLCIPGSEVPEWFSYKNREGSSVKIRQPAHWHRRFTLCAVVSFGQSGERRPVNIKCECHLIS
KDGTQIDLNSYFYEIYEEKVRSLWEREHVFIWSVHSKCFFKEASFQFKSPWGATDVVVGCGVHPLLVNEPEQPNPKTDGKCLTNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69550 disease resistance protein (TI... Potri.005G030318
[exp]
0 1
AT2G20142 Toll-Interleukin-Resistance (T... Potri.005G030413
[exp]
1.00 0.9824
AT1G69550 disease resistance protein (TI... Potri.005G031899
[exp]
1.41 0.9795
AT1G69550 disease resistance protein (TI... Potri.005G030700
[exp]
2.44 0.9605
AT5G36930 Disease resistance protein (TI... Potri.011G012000
[exp]
2.44 0.9132
AT2G20142 Toll-Interleukin-Resistance (T... Potri.005G032000
[exp]
2.64 0.9064
AT5G17680 disease resistance protein (TI... Potri.005G031101
[exp]
2.82 0.9581
AT5G27550 P-loop containing nucleoside t... Potri.005G031500
[exp]
3.16 0.9390
AT1G02170 AtMCP1b, ATMC1,... LSD ONE LIKE 3, ARABIDOPSIS TH... Potri.012G112700
[exp]
4.69 0.8237
AT2G20142 Toll-Interleukin-Resistance (T... Potri.001G007501
[exp]
4.89 0.8999
AT3G28345 MDR13, ABCB15 multi-drug resistance 13, ATP-... Potri.018G087100
[exp]
8.12 0.8495

Potri.005G030318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.