Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 558 / 5e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 546 / 2e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 492 / 4e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 463 / 1e-141 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G44510 457 / 2e-141 TAO1 target of AVRB operation1 (.1) AT5G11250 451 / 6e-139 Disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27170 441 / 9e-134 transmembrane receptors;ATP binding (.1.2) AT4G19510 434 / 1e-132 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G41540 422 / 1e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18350 419 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030318 [exp] 1466 / 0 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030700 [exp] 1262 / 0 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.004G088500 [exp] 1103 / 0 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G031899 [exp] 995 / 0 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G069500 [exp] 661 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 631 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 631 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 614 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 594 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039850 [exp] 546 / 7e-174 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 544 / 2e-172 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 522 / 2e-166 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 492 / 7e-154 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10005588 [exp] 483 / 4e-151 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 479 / 1e-149 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 471 / 3e-145 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 462 / 2e-142 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 449 / 6e-138 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 436 / 1e-134 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.005G031101.1 pacid=42805099 polypeptide=Potri.005G031101.1.p locus=Potri.005G031101 ID=Potri.005G031101.1.v4.1 annot-version=v4.1 ATGGCTTCCTCTTCTTCTCCCACTGCTCCATACTTGAAGTTCGATGTGTTCCTCAGTTTTAGAGGCAAAGACACCCGCAATAGTTTCACCAGTCATCTTT ATCATGCTTTGCAGCGAAACCAAATTGATGCTTACATCAATAATAAACTTGATGGAGGAGAAAAGATCGAGCCTGCCCTCTTGGAAAGGATTGAAGAGTC ATGTATTTCGCTAGTCATTTTCTCTGAAAATTATGCAGATTCTACTTTCTGTTTGAGGGAACTCTCCAAGATTCTTGAGTGTATGGAGACCAAACAACAG ATGGTTTTACCAGTTTTTTACCGACTTGATCCAAGCCATGTTCAAAATCTGACTGGGAGCTATGGAGATGCACTTTGCAAGCATGAAAGAGATTGCAGTT CTGAAGAAGTACAGAGTTGGAGACATGCTTTGAAAGAAATAGCTAATCTCAAGGGCTGGGATTCAAACGTTATGACAGCATGTCTTTGTTCTTTATTTAT TATGCACTGCTGGGATGAGACCAAGCTAATTCAGGAAATCGTTACTGACATTCAAAAGAAATTGAACCGTGAGCTGTCATCCTCATTTGATTCAAAACGC CTTGTTGGAATGAAATCACGCGTTGAAGACATCGAATCATTACTATCCTTTGGATCAACCGGTGTGCTCATTGTGGGAATCTGGGGGATGGGTGGTATAG GTAAGTCCACAACGGTTGAAACTGTGTATCGTCGAAACTGTAGTAAATTTGAAGGCCATTGCTGTTTCCAAGATGTTAGGGAAGAATCACGGAAGCATGG AGTAGATCATGTACGACAGGAAATTCTTGGCATGGTATTAGAGAAGAATGATCTCAAAATACACGGAAAAGTGCTACCCTCGGCCATTAAGCGAATGCTT CAAAGAAAAAAAGTCCTCATAGTTCTTGATGATGTCAATGATCCACAACATTTAAAATATTTAGTAGGAGAGGATGGTTTGTTTGGCCAAGGAAGTAGAA TCATTGTGACAAGTAGAGATAGGCGAGTTCTTGAAAATGCATGTGCTGAAGACAAAATTTACGAGGTTAAAATTTTAGATGAAGACGATGCACTTCGACT CTTCAGCTTTCATGCTTTTAAACAAGATCGTCCCATAGAAGGATATACTGGGCTTTCAAAAACTGTGGTAAGCTGTGTTAAGGGCATTCCATTAGTTCTC GAGGTTTTAGGTGGCAATCTATACAATAAAAGGAGTGTTGAATACTGGGAAAGTAAGGTGGCACAGCTAAGAACAAATGGTGGCGAGGACATTAAGAAAC ATTTGGAAATGTGCTATCATGAATTAGATCAGACAGAAAAGAAAATATTTCTTGATATAGCATGTTTCTTTGGACGGTGCAAGAAGGATTTTCTCCAACA AACACTAGATCTTGAAGAAAGAAGTGGGATAGATCGTCTCGCTGATATGTGTCTCATAAAAATTGTTCAAGACAAGATCAAGATGCATGATGTGCTCCTA AAACTAGGGAAAAAAATTGTCCTCCAAGAAAACGTTGACCCTAGAGAACGTAGCAGGTTGTGGGAGGCTGATGATATCTATCGTGTATTAACAACTCAGG GGACTGGATCAAAAGTGGAAAGCATATCCCTCATCTTGGATGCAACTAAAGAATTGACATTAAATCCTACAGCATTTGAAGGGATGTATAATTTAAGATT GCTCAAAATCTTCTACCCACCTTTCTTAAAGGATCCCTCAAAGGAGCAAATTATGAATCGAAAGAGGGTCGGAATCCACCTTCCAAGAGGGCTTCACTTT CTTTCAAGTGAGCTAAGGTTTCTCTACTGGTATAATTACCCTTTGAAATCCTTTCCATCAATTTTTTTCCCTGAGAAACTTGTTCAACTTGAAATGCCTT GTAGCCAGCTTGAACAACTTTGGAATGAAGGCCAGCTTCACCTTACTGGTTGCTCAGCACTAGCAAGTCTACCAGACAGCATTGATAGGTTGAAATGTCT TGATACGCTTCATCTTAGTGGTTGCTCAAGACTAGCAACTCTACCCGACAGTATTGGAGGGTTGAAATGCCTTGCTAAGCTTCACCTTACTGGTTGCTCA GGATTAGCAAGTCTACCAGATAGCATTGACAAGTTGAAATGTCTTGATACACTTCATCTTAGTGGTTGCTCAGGACTAGCAAGTCTACCAAACAGCATTG ACAGTCTACCAGACAGAATTGGCGAGTTGCAATCTCTTGAATGGCTTAATCTTCATGGTTGCTCAGGACTAGCAAGTCTACCAGACAGAATTGTCGAGTT GAAATCTCTTAAATCCCTTAATCTTAATGGTTGCTCGGGACTAGAAAGTTTACCAGACAGCATTGGCGGGTTGAGATGTCTTACTATGCTTAATCTTAGT GGTTGCTTAAAACTAGCAAGTCTACCTGACAGCATTGGCGCGTTGAAATGGCTTTATGCGCTTCACCTTACTGGTTGCTTAGGACTAAAAAGTCTACCAG ACAGCATTGGCGAGTTGAACCGTCTTACTACGCTCGATCTCAGTGGTTGCTTAAAACTAGCAAGTCTTCCAAACAACATCATTGATCTTGAATTTAAAGG ACTTGACAAACAGCATTGTTATATGCTGAGTGGATTCCAGAAAGTAGAAGAAATTGCATCATCCACCTATAAATTGGGCTGCCATGAATTTTTAAATTTG GGAAATTCTCGTGTGTTAAAAACTCCAGAGAGATTAGGCTCTTTGGTGTCGCTAACACAATTAAGATTATCTCAGATTGATTTCGAGAGGATACCTGCAA GCATCAAGCAACTTACTAAGCTAAGTAAACTCTATTTAGATGATTGCAAGCGGCTTCAATGTTTACCAGAGCTTCCATCAACTCTACAAGTTTTAATCGC ATCAGGTTGCATCTCTCTAAAATCTATAGCAAGTACATTCATGCAAGGTGATAGAGAATATAAAGCTGTTTCTCAGGAATTCAATTTCTCTGAATGCCTC CAACTGGATCAGAATTCACACACTAGAATTGTGGGTGCTGCCCATTTACGAATTCGACGCATGGCAACATCATTGTTTTATCAGGAATATCATGTTAAGC CATTAAAAGAAGTCCGGTTGTGTATTCGTGGGTCGGAAGTCCCGGAGTGGTTCAGTTATAAAAATAGAGAAGGATCGTCAGTAAAAATCCAGCAACCAGC TCATTGGCATCGTCGCTTCACTTTATGCGCTGTTGTTTCATTTGGCCAAAGCGGGGAAAGGCGTCCTGTTAATATTAAATATGAATGCCATTTGATAAGC AAAGATGGAACCCAGATTGATCTCAGTTCCTACTACTACGAAATATATGAAAAAAAGGTGAGGAGTTTATGGGAAAGGGAGCATGTGTTCATTTGGAGTG TCCACTCTAAGTGCTTTCAAGGAGGCCTCATTTCAATTCAAATCACCGTGGGGAACTACTGA
AA sequence Show only first row Show all	>Potri.005G031101.1 pacid=42805099 polypeptide=Potri.005G031101.1.p locus=Potri.005G031101 ID=Potri.005G031101.1.v4.1 annot-version=v4.1 MASSSSPTAPYLKFDVFLSFRGKDTRNSFTSHLYHALQRNQIDAYINNKLDGGEKIEPALLERIEESCISLVIFSENYADSTFCLRELSKILECMETKQQ MVLPVFYRLDPSHVQNLTGSYGDALCKHERDCSSEEVQSWRHALKEIANLKGWDSNVMTACLCSLFIMHCWDETKLIQEIVTDIQKKLNRELSSSFDSKR LVGMKSRVEDIESLLSFGSTGVLIVGIWGMGGIGKSTTVETVYRRNCSKFEGHCCFQDVREESRKHGVDHVRQEILGMVLEKNDLKIHGKVLPSAIKRML QRKKVLIVLDDVNDPQHLKYLVGEDGLFGQGSRIIVTSRDRRVLENACAEDKIYEVKILDEDDALRLFSFHAFKQDRPIEGYTGLSKTVVSCVKGIPLVL EVLGGNLYNKRSVEYWESKVAQLRTNGGEDIKKHLEMCYHELDQTEKKIFLDIACFFGRCKKDFLQQTLDLEERSGIDRLADMCLIKIVQDKIKMHDVLL KLGKKIVLQENVDPRERSRLWEADDIYRVLTTQGTGSKVESISLILDATKELTLNPTAFEGMYNLRLLKIFYPPFLKDPSKEQIMNRKRVGIHLPRGLHF LSSELRFLYWYNYPLKSFPSIFFPEKLVQLEMPCSQLEQLWNEGQLHLTGCSALASLPDSIDRLKCLDTLHLSGCSRLATLPDSIGGLKCLAKLHLTGCS GLASLPDSIDKLKCLDTLHLSGCSGLASLPNSIDSLPDRIGELQSLEWLNLHGCSGLASLPDRIVELKSLKSLNLNGCSGLESLPDSIGGLRCLTMLNLS GCLKLASLPDSIGALKWLYALHLTGCLGLKSLPDSIGELNRLTTLDLSGCLKLASLPNNIIDLEFKGLDKQHCYMLSGFQKVEEIASSTYKLGCHEFLNL GNSRVLKTPERLGSLVSLTQLRLSQIDFERIPASIKQLTKLSKLYLDDCKRLQCLPELPSTLQVLIASGCISLKSIASTFMQGDREYKAVSQEFNFSECL QLDQNSHTRIVGAAHLRIRRMATSLFYQEYHVKPLKEVRLCIRGSEVPEWFSYKNREGSSVKIQQPAHWHRRFTLCAVVSFGQSGERRPVNIKYECHLIS KDGTQIDLSSYYYEIYEKKVRSLWEREHVFIWSVHSKCFQGGLISIQITVGNY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	0	1
AT1G69550			disease resistance protein (TI...		Potri.005G030700 [exp]	1.00	0.9842
AT1G69550			disease resistance protein (TI...		Potri.005G030318 [exp]	2.82	0.9581
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.001G007501 [exp]	3.46	0.9006
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G030413 [exp]	3.46	0.9428
AT5G36930			Disease resistance protein (TI...		Potri.006G270000 [exp]	4.24	0.8906
AT5G66900			Disease resistance protein (CC...		Potri.007G039100 [exp]	4.47	0.9162
AT1G69550			disease resistance protein (TI...		Potri.005G031899 [exp]	4.47	0.9323
AT1G69550			disease resistance protein (TI...		Potri.004G088500 [exp]	4.47	0.8851
					Potri.017G003689 [exp]	4.58	0.8993
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G087100 [exp]	9.16	0.8560

Compare expression of checked genes

Potri.005G031101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.