Plant FIBer expression Database

Potri.005G031899 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69550 468 / 1e-140 disease resistance protein (TIR-NBS-LRR class) (.1)
AT5G17680 377 / 5e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1)
AT1G27180 345 / 3e-97 disease resistance protein (TIR-NBS-LRR class), putative (.1)
AT5G44510 336 / 2e-95 TAO1 target of AVRB operation1 (.1)
AT1G27170 338 / 3e-95 transmembrane receptors;ATP binding (.1.2)
AT4G12010 335 / 4e-95 Disease resistance protein (TIR-NBS-LRR class) family (.1)
AT2G14080 331 / 1e-93 Disease resistance protein (TIR-NBS-LRR class) family (.1)
AT4G16890 332 / 2e-93 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
AT3G25510 327 / 1e-90 disease resistance protein (TIR-NBS-LRR class), putative (.1)
AT5G51630 311 / 2e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G030700
[exp]
2098 / 0 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
Potri.004G088500
[exp]
1246 / 0 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
Potri.005G030318
[exp]
1232 / 0 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
Potri.005G031101
[exp]
980 / 0 AT5G17680 557 / 8e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.019G069500
[exp]
469 / 2e-140 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.019G070001
[exp]
439 / 1e-130 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.019G070565
[exp]
435 / 1e-129 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.019G070700
[exp]
434 / 3e-129 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Potri.019G070393
[exp]
433 / 6e-127 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039850
[exp]
404 / 9e-119 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10018616
[exp]
395 / 6e-115 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10029628
[exp]
386 / 4e-111 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10030839
[exp]
343 / 6e-98 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Lus10041060
[exp]
337 / 2e-95 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10029722
[exp]
331 / 2e-94 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10005588
[exp]
327 / 2e-92 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10001375
[exp]
320 / 3e-89 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Lus10041078
[exp]
309 / 3e-89 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10030345
[exp]
305 / 9e-86 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00931 NB-ARC NB-ARC domain
Representative CDS sequence
>Potri.005G031899.1 pacid=42803283 polypeptide=Potri.005G031899.1.p locus=Potri.005G031899 ID=Potri.005G031899.1.v4.1 annot-version=v4.1
ATGCACTGCAGGGATGAGATCAAGCTCATTGAGGAAATTGTTTCTGACATTCAAAAGAAATTACACCATGAGCCCTCACCCTCAATCGATGCAGAACGCC
TTGTTGGAATGAAATCACGCGTTAAAGACATCGATTCATTGCTATCCTTTGGATCAACCGGTGTGCTCATTGTGGGAATCTGGGGGATGGGTGGTATAGG
TAAGTCAACAACGGCTGAAGCCGTGTATCATCGAAACTGTAGTAAATTTGAAGGCCATTGCTTTTTCCAAAATGTTAGGGAAGAATCACAGAAGCATGGA
ATAGATCATGTAAGACAGGAAATTCTTGGTGAAGTATTAGAGAAGAAAGATATGACTATACGCACAAAAGTGTTACCCCCGGCCATTAAGCGAATGCTTC
AAAGAAAAAAAGTTCTCATAGTTCTTGATGATGTCAACGATCCACAAGTTTTAAAATATTTACTAGGAGAGGATGGTTTGTTTGGCCAAGGAAGTAGAAT
CATGGTGACAAGTAGAGATAGGCAAGTGCTTATAAATGAATGTGATGAAGACAAAATTTACGAGGTTGAAATTTTAGAGGAAGACGATGCACTTCGACTC
TTCAGCTTACATGCTTTTAAACAAAATAATCCCATAGAAGGATATATTGGGCTATCAAAAACCGTGGTAAGCTGTGTTAAGGGCGTTCCATTAGTTCTCG
AGGTTTTAGGTGCCAGTCTATGCAGAAAGACTAGTGTAGAATACTGGGAAAGCAAGGTGGCACAGCTAAGAAAAAATGGTTGCGAGGACATTAAGAAATG
TTTGGAAATGTGCTATCATGAACTAGATCAGACAGAAAAGAAAATATTTCTTGATATAGCATGTTTCTTTGGACGGTGCAAAAGGGATCACCTCCAACAA
ACACTCGATCTGGAAGAAAGAAGTGGGATAGATCGTCTCATTGATATGTGTCTCATAAAAATTGTTCAAAACAAGATCTGGATGCATGATGTGCTAGTAA
AACTAGGGAAAAAAATTGTCCACCAAGAAAACGTTGACCCTAGAGAACGTAGCAGGTTGTGGCAGGCTGATGATATCTATCGTGTATTAACAACTCAGAG
GACTGGATCAAAAATGGAAAGCATTTCCCTCAACTTGCTTGCAATTACTGAAGAAATGATCTTAAGTCCTACAGCATTTGAAGGGATGTATAATTTAAGA
TTGCTCAAAATCTACTACCCACCTTTCTTAAAGGATCCCTCAAAGGAGCAAATTATGAACGGAAAGAGGGTCGGAATCCACCTTCCAGGAGGGCTTCACT
TTCTTTCAAGTGAGCTAAGGTTTATCTACTGGTATAATTACCCTTTGAAATCCATGCCATCAAATTTTTTCCCTAAGAAACCTTTTCAACTTGAAATGCC
TTGTAGCCAGCTTGAACAACTTTGCAATGAATACCAGCCACTTGAGAAATTAAAATTAATTAACCCCCCTTCCTCAAAGCCGAGCTTAATTGATTCAGAC
CTGTCTAAAGTCCCACACCTTGAGGTTCTACATCCAGGTATACCTTCCTCTATTAAATACAGCACCAGACTTACCACATTAGAGCTTCTCAGACTCGAGA
GTTTCTATACTTTGCCATCATCAATTGGGTGCCTCTCTCAACTTGTTAGGTTAAACTTATCTTCATGTGAAAGTCTTGCTAGTCTACCGGACAACATTGA
TGAGTTAAAATCTCTTGTAGAGCTTGATCTTTATTCTTGCTCAAAACTAGCAAGTCTTCCAAATAGCATTTGCAAGTTGAAATGTCTTACTAAGCTTAGT
CTTGGTCGTCAGCCAAAACTAGCAAGTCTACCTGACAACATTGGGGAGCTGAGATCTCTTGTAAAGCTTAGTCTTTCTTCTTGCTCAAAACTAGCCAGTC
TACCCGACAGTATTGGCGAGTTGAGATCTCTTGTAGAGCTTCATGTTTTTTCTTGCTCAGGACTAGCAAATCTACCAGACAGCATTGGCGAGTTGAGATC
TCTTGAAGAGCTTGATCTTAATGGTTGCTTTGGACTAGCAAGTCTACCAAACAGCATTGGCGAGTTGAAATCTCTTCAATGGTTTGATCTTAATGGTTGC
TTTGGACTAGCAAGTCTACCAGACAGCATTGGCGCGTTGAAATCTCTTCAAAGGCTTTATCTTGATGGTTGCTCGGGACTAGCAAGTCTACCGAGCAGCA
TTGGTGGGTTGAAATCTCTCAAATCGCTTTTCTTAAGAGTAGCAAGTCAACAAGACAGCATTGACGAGTTGGAATCTCTTAAATCGCTTATTCCTAGTGG
TTGCTTAGGACTAACAAGTCTACCAGACAGTATTGGTGCACTGAAATCTCTTGAAAACCTTTATTTTAGTGGTTGCTCAGGACTAGCAAGTCTACCAGAC
AATATTGGCTCGTTGAAATCTCTCAAATCACTTACACTTCATGGTTGCTCAGGACTAGCAAGTCTACAAGACAGAATTGGCGAGTTGAAATCTCTTGAAA
AGCTTGAGCTTAATGGTTGCTTAGGACTAGCAAGTTTACCGGACAACATTGGCACATTGAAATCTCTCAAATGGCTTAAACTTGATGGTTGCTCAGGACT
AGCAAGTCTACCGGACAGAATTGGCGAGTTGAAATCTCTTAAACAACTCTATCTTAATGGTTGCTCAGGACTAGCAAGTCTAACGGACAACATTGGCGAG
TTGAAATCTCTTAAACAACTCTATCTTAATGGTTGCTCGGGACTAGCAAGTCTACCAGACAGAATTGGCGAGTTGAAATCTCTTGAACTGCTCGAACTTA
ATGGTTGCTCAGGACTAGCAAGTCTACCAGACACCATTGACGCATTGAAATGTCTCAAAAAGCTTGATTTTTTTGGTTGCTCGGGACTAGCAAGTCTACC
GAACACCATTGGCGAGTTGGAATCTCTCCAACAGCTTCGTCTTGTTGATTTCGCACAACTAGCAAGTCTACCGGACAACATTGGCGCGATGAAATCTCTT
GAATGGCTTGTACTTTCTGGTTGCTCAGGACTAGCAAGTCTACCAGACAACATTGGCGAGTTGGAATCTCTCCAATCTCTTCTTCTTAGTGGTTTCTCAC
AACTAGCAAGTCTACCAGACAGCTTTGGCGCGTTGAAATCTCTCAAATCGCTTAGTCTTTTTGATTGCTCAGGACTAGCAAGTCTACCGGACAACATTGG
CGAGTTGGAATCTCTCCAATCTCTTCATCTTAGTGGTTTCTCACAACTAGCAAGTCTACCGAACAGCATGACTGCGTTGAAATCTCTCAAATCGCTTAGT
CTTTATGGTTCCCCGGGATTAGCAAGTCTACTGGACAACATTGGTGCGTTGAAATCGCTAAATTCGCTTTATCTTAGTGGTTTCTCAGAACTAGCAAGTC
TACCGGACAACATTTGCGCATTGAAATCTCTTGAATCGCTTAGTATTCGTGGTTGCTTAGGACTAGCAAGCCTACCGGACAACATTGGCGGGTTGAAATC
TCTTACGTGGCTTAATCTTTCTGGTTGCTCAGGACTAAAAAGTCTACCGGATAGCATTGGCGAGTTGAAAAATCTTATGACGCTCTTTCTCGGTGGTTGC
TTAAAACTAGCAAGTCTTCGAGATAACTTCATTGATATTGAATTTAGAGGACTTGACAAACAGCGTTGTTATACACTGAGAGGATTCCAGAAAGTAGAAG
AAATTGCATCATCCACCTATAAATTGGGCTGCCATGAATTTTTAAATTTGGGAAATTCTCGTGTGTTAAAAACTCCACAGAGCTTAGGCTCTTTGGTGTC
GCTAACAAAATTGAGATTATCTGAGATTGATTTTGAGAGGATACCTGCAAGCATCAAGCACCTTACTAAGCTACGAGAACTCTATTTAGATGACTGCAAG
CGGCTTCAATGTTTACCAGAGCTTCCATCGACTCTACAAGTTTTAATCGCATCAGGCTGCATCTCTCTAAAATATGTAGCAATTATATCCATGCAAGGTG
ATAGAGAATATGACGATGCTTCTCAGGAATTCAGTTTCTCCGGATGCCTCCAACTGGATCAGAATTCACGCACTAGAATTATGGGTGATGCCCGTTTACG
AATTCAACGCATGGCAACATCGTTGGTTTATCAGGAATATCATCGTCAGAACAATAGAGTTCGGTTGTGTATTCCCGGGTCGGAAGTCCCGGAGTGTTTC
AGTTATAAAAATAGAGACGGATCTTCAGTAAAAATCCGGCAACTAGCTCGGTGGCATCGTGGTTTCACTTTATGCGCTGTTGTTTCATTTGGCCAAAGCG
AGGAAAGGCGTTCGGTTAATATTGAGTGTGAATGCCATTTGATAATCAAAGATGAAACCCAGATTGATCTCAGTTCCTACTACTACAAAGAATATGAAAT
AATGGCGTGGAGTAGTACTGTATGGAAAAAGGAGCAAGTGTTCATTTGGAGTGTCCACTGTAAGTGCTTTTTCAAGGAGGCCTCGTTCCATTTCAAACCA
CTGTGCGGAGCTACTGATGTGGTGGTTAAGTGTGGAGTCCATCCATTGTTAAAGTAG
AA sequence
>Potri.005G031899.1 pacid=42803283 polypeptide=Potri.005G031899.1.p locus=Potri.005G031899 ID=Potri.005G031899.1.v4.1 annot-version=v4.1
MHCRDEIKLIEEIVSDIQKKLHHEPSPSIDAERLVGMKSRVKDIDSLLSFGSTGVLIVGIWGMGGIGKSTTAEAVYHRNCSKFEGHCFFQNVREESQKHG
IDHVRQEILGEVLEKKDMTIRTKVLPPAIKRMLQRKKVLIVLDDVNDPQVLKYLLGEDGLFGQGSRIMVTSRDRQVLINECDEDKIYEVEILEEDDALRL
FSLHAFKQNNPIEGYIGLSKTVVSCVKGVPLVLEVLGASLCRKTSVEYWESKVAQLRKNGCEDIKKCLEMCYHELDQTEKKIFLDIACFFGRCKRDHLQQ
TLDLEERSGIDRLIDMCLIKIVQNKIWMHDVLVKLGKKIVHQENVDPRERSRLWQADDIYRVLTTQRTGSKMESISLNLLAITEEMILSPTAFEGMYNLR
LLKIYYPPFLKDPSKEQIMNGKRVGIHLPGGLHFLSSELRFIYWYNYPLKSMPSNFFPKKPFQLEMPCSQLEQLCNEYQPLEKLKLINPPSSKPSLIDSD
LSKVPHLEVLHPGIPSSIKYSTRLTTLELLRLESFYTLPSSIGCLSQLVRLNLSSCESLASLPDNIDELKSLVELDLYSCSKLASLPNSICKLKCLTKLS
LGRQPKLASLPDNIGELRSLVKLSLSSCSKLASLPDSIGELRSLVELHVFSCSGLANLPDSIGELRSLEELDLNGCFGLASLPNSIGELKSLQWFDLNGC
FGLASLPDSIGALKSLQRLYLDGCSGLASLPSSIGGLKSLKSLFLRVASQQDSIDELESLKSLIPSGCLGLTSLPDSIGALKSLENLYFSGCSGLASLPD
NIGSLKSLKSLTLHGCSGLASLQDRIGELKSLEKLELNGCLGLASLPDNIGTLKSLKWLKLDGCSGLASLPDRIGELKSLKQLYLNGCSGLASLTDNIGE
LKSLKQLYLNGCSGLASLPDRIGELKSLELLELNGCSGLASLPDTIDALKCLKKLDFFGCSGLASLPNTIGELESLQQLRLVDFAQLASLPDNIGAMKSL
EWLVLSGCSGLASLPDNIGELESLQSLLLSGFSQLASLPDSFGALKSLKSLSLFDCSGLASLPDNIGELESLQSLHLSGFSQLASLPNSMTALKSLKSLS
LYGSPGLASLLDNIGALKSLNSLYLSGFSELASLPDNICALKSLESLSIRGCLGLASLPDNIGGLKSLTWLNLSGCSGLKSLPDSIGELKNLMTLFLGGC
LKLASLRDNFIDIEFRGLDKQRCYTLRGFQKVEEIASSTYKLGCHEFLNLGNSRVLKTPQSLGSLVSLTKLRLSEIDFERIPASIKHLTKLRELYLDDCK
RLQCLPELPSTLQVLIASGCISLKYVAIISMQGDREYDDASQEFSFSGCLQLDQNSRTRIMGDARLRIQRMATSLVYQEYHRQNNRVRLCIPGSEVPECF
SYKNRDGSSVKIRQLARWHRGFTLCAVVSFGQSEERRSVNIECECHLIIKDETQIDLSSYYYKEYEIMAWSSTVWKKEQVFIWSVHCKCFFKEASFHFKP
LCGATDVVVKCGVHPLLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69550 disease resistance protein (TI... Potri.005G031899
[exp]
0 1
AT1G69550 disease resistance protein (TI... Potri.005G030318
[exp]
1.41 0.9795
AT5G27550 P-loop containing nucleoside t... Potri.005G031500
[exp]
1.41 0.9705
AT2G20142 Toll-Interleukin-Resistance (T... Potri.005G030413
[exp]
2.44 0.9697
AT5G27550 P-loop containing nucleoside t... Potri.005G031850
[exp]
3.46 0.8948
AT1G69550 disease resistance protein (TI... Potri.005G030700
[exp]
4.00 0.9421
AT5G17680 disease resistance protein (TI... Potri.005G031101
[exp]
4.47 0.9323
AT2G20142 Toll-Interleukin-Resistance (T... Potri.005G032000
[exp]
4.58 0.8774
AT1G06410 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTH... Potri.011G070900
[exp]
6.63 0.8135 Pt-TPS7.1
AT5G36930 Disease resistance protein (TI... Potri.011G012000
[exp]
7.48 0.8693
AT1G18270 ketose-bisphosphate aldolase c... Potri.015G037000
[exp]
7.74 0.8404

Potri.005G031899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.