Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 422 / 3e-133 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G48620 311 / 7e-92 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 304 / 4e-89 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 296 / 3e-86 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 294 / 4e-86 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 277 / 2e-79 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 272 / 8e-78 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 268 / 4e-76 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59620 261 / 3e-74 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 252 / 9e-71 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035700 [exp] 1266 / 0 AT3G07040 397 / 1e-123 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.011G165700 [exp] 1052 / 0 AT3G07040 471 / 1e-151 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 555 / 0 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 547 / 1e-180 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 531 / 2e-174 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 530 / 5e-174 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 527 / 2e-172 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.002G216800 [exp] 521 / 1e-170 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 517 / 3e-169 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 477 / 7e-154 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 459 / 3e-146 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 447 / 1e-142 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 423 / 3e-133 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 417 / 1e-130 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 412 / 1e-128 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 411 / 2e-128 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 406 / 8e-127 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 356 / 1e-107 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 224 / 7e-63 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.005G035400.3 pacid=42802980 polypeptide=Potri.005G035400.3.p locus=Potri.005G035400 ID=Potri.005G035400.3.v4.1 annot-version=v4.1 ATGGCAGAGTCGGCGGTGAGCCTTGTTGTTGATAAATTGCTTCCGTTGCTAACACAAGAAGTGAAACTATTGAAAGGCGTCCATGATGAATTGGTTGGTG TCAAAGATGAATTGGAAGTCATTCGTGCTTTCCTGAAAGATGCAGATTCAAAGGCTGGGAAAGAAGGCATCGGTGAGGGTGTGAAAGTACTGGTAAACCA AATAAGAGAAGAAGCTCATCACATTGAAGATGTCATCGATGATTACATGTTGCATGTGGCAAGACATCCTGATAATCGACATGGACTCCTACGTCATATT GCTTCTTTGATTAAAACATTCAGTTCGCGTCATGAGATAGCATCAGAGATTAAAGACATCAAATCATCACTTCTAGATATCAAGAATAGAAGTCAAACAT TCCACTTCATTTCTTCAAATCAGGGAGCATCAAGCAGCAACAGCAATGCAGGAAGAGGGTTAATGGATCACCCTCGACTGAGTTCTCTTTTCATTGAAGA AGCTGAGCTTGTTGGGATTGAATCTCCAAGAGATGAATTGATAAGCTACTTATTAAGTGGAGTTTCTCAAAGGACAGTGATCGCAGTGGTTGGAATGGGA GGTGTGGGAAAAACCACAGTGGCCAAGAAAGTATATGACAACCACAGGGTGAAAGAGCACTTCCAATACCATGCTTGGATCACTGTGTCTCAATCATATG ATAAGAGGGAGCTACTACGGAGCATTCTGAAGAGATTCTATGAAGTGAAAAATGGGCTTTTTCCTGATAGAATTGTTACAATGGAGGAGGAGGAGTTGAT CAAGGAGATTAGAGAATATTTAGGACAAGAACGATACCTGGTTGTATTTGATGATGTATGGGAAATTGGCTTTTGGGGAAACATGGAGCATGCGTTGTTA GATCATGATAATGGCAGTAGAATATTGGCCACAACAAGAAATGAGGATGTTGCTAATTTTAGCAGAGGATCTTCATTGGTTCATGTCTATCATATAGAAC CTTTACCTCAAAAGGAGGCGTGGGAACTCTTCTGCAATAAAGCATTCAGGTCTGAGTTTAAAGGGCAATGTCCAAAAGATCTGGAGGAATTGTCACAGGA CATTGTTAGAAGATGTGGAGGATTGCCTCTGGCAATTGTGGCTGTTAGTGGACTTCTAGCAACCAAAGAAAAGAGCATTCTAGAATGGAAAAAATTCCTC AGTGGCCTTGGTGGTTCTGCAATGGTGAGTGATCCATACATTGATAGTGTCACTAACATTCTATCTCTCAGCTATGGTGATCTGCCTTACCACCTCAAAT CTTGTTTCTTATATTTTGGCATGTTTCCTGAAGATTTTTCCATTGTGCATGGAAGAATAATTCGATTATGGGTGGCTGAGGGTTTTGTAGAAGAAAAACC AGGCATGACACTAGAGGACGTTGGAGAAGAATACTTCATTGAACTCGTTCGTCGAAATTTGGTTCAAGTGGATGAAGTTTTTCACGGAGTTCCCTTAACA TGTCATGTTCATGATATGGTCCGTGATGTCATTCTTTCCAAGTCAGAGGAACTGAGTTTCTGCCATGTTTCCAGCAGTTGCTCAACTTTTCAAGGCATAG CACGACATCTCTCAATAAGCAACAGAGGAAGCAACACTCCAAAGAGTAGCACCAAGTCTCAAACTCGCTCTATTATGGTCTTTGACGAAGTAAAGCTGCA GAAGGCCACAATTCAAGTGATACTTGCAAAATTCAAGCTTTTGACTACATTAGATTTTGAAAACTGTCCTATAGATCACCTTCCCAAAGAACTTGGAAAT TTGCTACATCTAAGGTATTTAAACTTGAGAAATACCAAAGTAGCAAAACTTCCAAAATCAATAAGAAAGCTGCATAACCTGGAATCTTTAGATTTGAGAT ATTCTTTCGTGGAAGAGTTGCCAGTTAAGATCAGTAATTTCCCTAAATTGCGACATCTTTTGGCTGAAGATAAAAAGACTCGGGCATTGAAGATAAAAGG CAGCATTAAGCATTTGGAGTTCTTACAAACATTGTCTAAAATTAATGTGGATGACAATGTGAGCTTGATCAATGACGGCCTGCAAGTGTCAACGGAATTG AAGACATTGGGTATCAGAAATTTGAAAAGGGAACATGGGAGGTATCTATGCACTGCATTGGAGAAGATGACTCACCTGCGGTTGCTACTTGTTTGTTCAA TAAATCCCACGAATGAAGTTCTTGAATTGCAATCGATGTCTTCTCCTCCTCTTGAGCTGCGAAGTATCTGGCTTGAGGGCCAATTAGAAAGGTTACCAAA TTGGATTTCCAAAATACACAATCTGGCTGAACTGAGATTGAGTTTCACAAACTTGAAGGATGATTCCTTTGAAGTCCTTCAAGCTCTGCCCAATCTAAAT CGTCTTGGACTCGTATGTGCATACAATGGAGAGAAGATGCATTTTGAAGGAGGAGGGTTTCAGAAACTCAAGTCTCTGTATCTTGTAGGCTTGAGTAATT TGAAGGAAATGTTAATAGACGAAGGAGCATTGCCACTTCTTGAAAAGCTACAGATGGGACCTTGCCCAAAACTGAAGGAAGTGCCTTCTGGATTTAAGTA CTTGAGATATCTCAAAGATTTATCATTCACAGGGATGACAAATGAGTTCACTCAAAGATTGTCACAGCAAGAATCAGAGAAAGTGAGGCATGTACCGATT ATCCAATATGATGGTACTTATGATCCCAGTGACGAAGGATCTTATGAAGCATGGGTGGAGCGATATTTCAGACGAGTAGGAATCAAAATGACCTAA
AA sequence Show only first row Show all	>Potri.005G035400.3 pacid=42802980 polypeptide=Potri.005G035400.3.p locus=Potri.005G035400 ID=Potri.005G035400.3.v4.1 annot-version=v4.1 MAESAVSLVVDKLLPLLTQEVKLLKGVHDELVGVKDELEVIRAFLKDADSKAGKEGIGEGVKVLVNQIREEAHHIEDVIDDYMLHVARHPDNRHGLLRHI ASLIKTFSSRHEIASEIKDIKSSLLDIKNRSQTFHFISSNQGASSSNSNAGRGLMDHPRLSSLFIEEAELVGIESPRDELISYLLSGVSQRTVIAVVGMG GVGKTTVAKKVYDNHRVKEHFQYHAWITVSQSYDKRELLRSILKRFYEVKNGLFPDRIVTMEEEELIKEIREYLGQERYLVVFDDVWEIGFWGNMEHALL DHDNGSRILATTRNEDVANFSRGSSLVHVYHIEPLPQKEAWELFCNKAFRSEFKGQCPKDLEELSQDIVRRCGGLPLAIVAVSGLLATKEKSILEWKKFL SGLGGSAMVSDPYIDSVTNILSLSYGDLPYHLKSCFLYFGMFPEDFSIVHGRIIRLWVAEGFVEEKPGMTLEDVGEEYFIELVRRNLVQVDEVFHGVPLT CHVHDMVRDVILSKSEELSFCHVSSSCSTFQGIARHLSISNRGSNTPKSSTKSQTRSIMVFDEVKLQKATIQVILAKFKLLTTLDFENCPIDHLPKELGN LLHLRYLNLRNTKVAKLPKSIRKLHNLESLDLRYSFVEELPVKISNFPKLRHLLAEDKKTRALKIKGSIKHLEFLQTLSKINVDDNVSLINDGLQVSTEL KTLGIRNLKREHGRYLCTALEKMTHLRLLLVCSINPTNEVLELQSMSSPPLELRSIWLEGQLERLPNWISKIHNLAELRLSFTNLKDDSFEVLQALPNLN RLGLVCAYNGEKMHFEGGGFQKLKSLYLVGLSNLKEMLIDEGALPLLEKLQMGPCPKLKEVPSGFKYLRYLKDLSFTGMTNEFTQRLSQQESEKVRHVPI IQYDGTYDPSDEGSYEAWVERYFRRVGIKMT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G035400 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134300 [exp]	2.82	0.9750
AT2G42440	AS2		Lateral organ boundaries (LOB)...		Potri.002G041100 [exp]	3.00	0.9597
					Potri.003G200750 [exp]	3.16	0.9575
AT5G06490			RING/U-box superfamily protein...		Potri.010G243200 [exp]	6.32	0.9581
					Potri.010G219300 [exp]	6.70	0.9422
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028500 [exp]	7.93	0.9487
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134450 [exp]	8.83	0.9524
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	9.48	0.9343
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.001G436800 [exp]	14.14	0.9406
AT5G55860			Plant protein of unknown funct...		Potri.001G369200 [exp]	14.21	0.8397

Compare expression of checked genes

Potri.005G035400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.