Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 228 / 2e-61 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 225 / 2e-60 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT4G27190 224 / 1e-59 NB-ARC domain-containing disease resistance protein (.1) AT1G12280 176 / 9e-45 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 172 / 3e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12220 168 / 3e-42 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12290 166 / 2e-41 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12210 159 / 2e-39 RFL1 RPS5-like 1 (.1) AT1G61190 154 / 1e-37 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G10780 152 / 6e-37 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G042400 [exp] 2739 / 0 AT4G27220 234 / 4e-63 NB-ARC domain-containing disease resistance protein (.1) Potri.005G042900 [exp] 2706 / 0 AT4G27190 240 / 7e-65 NB-ARC domain-containing disease resistance protein (.1) Potri.013G015700 [exp] 1687 / 0 AT4G27190 257 / 2e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.013G015900 [exp] 1607 / 0 AT4G27190 268 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.005G062130 [exp] 1213 / 0 AT4G27220 256 / 5e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.005G061860 [exp] 1198 / 0 AT4G27220 230 / 1e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.013G027300 [exp] 1186 / 0 AT4G27190 244 / 8e-66 NB-ARC domain-containing disease resistance protein (.1) Potri.019G036875 [exp] 1072 / 0 AT4G27190 178 / 9e-45 NB-ARC domain-containing disease resistance protein (.1) Potri.001G444500 [exp] 483 / 8e-143 AT4G27190 241 / 5e-65 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 89 / 2e-17 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 82 / 3e-15 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 79 / 4e-14 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 77 / 1e-13 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10042117 [exp] 72 / 4e-12 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 71 / 6e-12 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 71 / 1e-11 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10032759 [exp] 68 / 5e-11 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10004127 [exp] 66 / 2e-10 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 66 / 2e-10 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.005G041101.3 pacid=42805167 polypeptide=Potri.005G041101.3.p locus=Potri.005G041101 ID=Potri.005G041101.3.v4.1 annot-version=v4.1 ATGGATATTGTGATTTCTGTTGTAGCCAAAGTAGCTGAGCTGTTAGTTGTTCCCATTAGGAGACAGATTGGTTATGTAGTTGATTGTAATACCAATATTC AGAACTTAAAAAATGAAGTTGAGAAGCTGAGAGATGCAAAAACAAGGGTGATTCATTCCATAGAGGAGGCTAGAAGGAATGGGGAAGAGATTGAAGTTGA TGTTGAGAACTGGCTGCGAAGTGTTGATGGGGTCATTGAAGGGGGAGGTGGTGTTGTTGGAGATGAATCAAGTAAGAAGTGCTTCATGGGTTTGTGTCCT GATCTAAAGATACGTTATCGGTTGGGTAAAGCAGCGAAGAAGGAGTTGCCTGTTGTTGCTGTTTTCCAGGAAAAAGGGAAATTTGAGAGAGTTTCTTACC GTGCTGATCCATCGGGTATAGGGCTTGTCAAGGATTATGAGGCCTTTGAATCAAGAAATTCTGTATTAAATGCTATTGTGGATGCATTGAAGGATGGTGG CGTGAACATGGTTGGGGTGTATGGGATGGGTGGTGTGGGGAAGACCACACTTGTGAAGAAGGTTGCTGAACAAGTCAAGGAGGGTAGGCTGTTCGATAAG GTGGTTCTGGCACTTGTGTCACATACTCCAGACATCAGAAGAATTCAAGGTGAAATATCAGATGGGCTGGGATTCAAATTGGATGCAGAGACTGATAAAG GAAGGGCAAGTCAACTATGCGGGGGATTGAAGAAAGTGACTAAAGTACTTGTAATTCTTGATGATATTTGGAAAGAACTTAAATTGGAGGATGTTGGAAT CCCTTCAGGGAGCGATCATGAAGGATGCAAGATACTCATGTCTTCAAGAAATGAATATGTACTGTCTCGCGAGATGGGTGCAAACAAAAATTTCCCGGTT CAAGTTTTGCCTGTAAGAGAAGCATGGAATTTTTTCGTAAAGATGGTGGGGGTTACTGTTAAAAACCCTAGTGTACAACTAGTTGCTGCTGAAGTAGCCA AAAGATGTGCAGGTTTGCCGATTTTACTTGCTACAGTTGCTAGGGCACTGAAAAACAAAGATTTATATGCTTGGAAGGAGGCCTTGAAACAGCTAACAAG GTTTGATAAAGATGAAATTGACAATCAAGTTTACTCGTGTCTAGAACTGAGTTACATGGCTTTGAGAGGTGATGAAATCAAGCCATTGTTCTTGCTTTGT GGGCAATTCCCAACTTATGATACTTCAATCTCAGACTTGTTAAAGTATGCTATAGGCTTGGATTTGTTCAAGGGACGTTCCACATTGGAAGAAGCAAGAA ACAGACTGCATACATTGGTGGATGAACTTAAAGCCTCTTGTTTGTTGCTAGAAGGTGACTTTGGTGGAAGCGTGAAAATGCATGATGTTGTTCAAAGTTT TGCCATCTCTGTTGCATCAAGGGACCACCATGTGCTTATCGTGGCAGATGAATTCAAGGAATGGCCAACCAATGATGTGCTTCAACATTACACTGCAATC TCTTTGCCTTTCCGGAAAATTCCTGATCTTCCTGTAATATTAGAATGCCCAAATCTCAATTCGTTTCTACTGCTGAACAAGGATCCCTCACTGCAAATAC CAGACAACTTTTTCAGAGAAATGAAGGAGCTTAAAGTCTTGGATCTGACAGGAGTTAATCTTTCACCACTGCCTTCGTCACTTCAATTTCTTGAGAACCT TCAAACGCTGTGTTTGGATCATTGTGTTTTGGAAGATATATCTATAGTTGGAGAGCTAAAGAAGTTAAAAGTTCTCAGCTTAATCAGTTCTAATATTGTT TGTTTGCCAAGAGAAATCGGAAAATTGACTCGTCTGCTACTTCTAGATTTGAGCAATTGTGAAAGGCTTGAAGTAATATCACCAAATGTCCTTTCTTCCT TGACCCGGCTAGAAGAATTATATATGGGAAACAGCTTCGTGAAATGGGAGACTGAAGGACCAAGCAGTCAAAGAAACAATGCTTGCCTGTCAGAATTGAA GCTTCTGTCAAACTTAATTACCTTACACATGCAAGTTACAGATGCAGATAATATGCCCAAGGACTTGTTTTTGTGCTTTCAAAAGTTGGAAAGGTTCAGA ATATTTATTGGAGATGGGTGGGACTGGTCTGTTGAGGATGCAACGTCAAGAACTTTGAAACTCAAGCTCTATACAGTTATTCAGTTGGAGGAGTGGGTGA AAACGCTGCTGAAGATCACTGAAGAACTTCATTTGCAAGAACTGAATGGTGTTAAGAGTATCCTCAATGACTTGGACGGGGAAGGTTTCCCTCAGCTGAA GCATCTTCACGTCCAAAATTGTCCTGGAATTCAATATATCATCAACTCGATTAGGATGGGTCCTCGAGCTGCTTTTCTGAACTTGGACTCACTGTTTCTT GAAAATTTGGATAACTTGGAGAAGATCTGTCATGGCCAACTTATGGCAGAGTCGCTTGGAAACTTGAGAATTTTGAAGGTAGAAAGTTGTCATAGGTTGA AGAATTTATTTTCATTCTCCATGGCAAGAAGACTTGTGCGCCTTGAAGAAATCACAATAATTGATTGCAAGATCATGGAAGAGGTTGTTGCTGAGGAAAG TGAGAATGATGCTGCTGACGGTGAACCAATAGAGTTCACTCAATTACGTAGACTGACACTTCAATGTCTGCCTCAGTTCACAAGCTTTCACTCCAATGTC GAGGAATCTTCTGACTCGCAGAGAAGGCAGAAGCTAGTAGCAAGTGATGCGAGGTCAAAAGAAATTGTTGCGGGGAATAAGCTTGGGACTTCCATGTCAC TTTTCAATACAAGGATTTTATTCCCCAATTTGGAGGACCTGAAGCTCTCCTCTATCAAAGTGGAAAAGATATGGCATGACCAACCTGCTGTGCAGTCTCC CTGTGTTAAAAACTTAGCAAGCATTGTTGTGGAGAATTGTAGTAATTTAAACTATTTATTGACATCTTCTATGGTCGAAAGGCTTGCTCAACTCAAAAGG CTTGAAATATGTAATTGCAAGTCCATGGAAGAAATAGTTGTTCCAGATGGAATCGGAGAAGGCAAAATGATGAGCAAGATGCTATTCCCTAAACTACTCA TCCTAGAGCTCAATGGTCTGCCGAAACTCACAAGATTCTGCACCAGTAACTTGCTTGAATGCCACTTCCTGAAAGTGCTGACGTTAGGGAATTGCCCTGA ACTGAAGGAATTTATTTCCATCCCATCAAGTGCAGATGTCCCTGTCATGAGCAAACCTGACAACACAAAATCAGCTCTCTTCGATGACAAGGTTGCATTC CCTGACTTGGAGGTATTTCGAATTTTCGACGTGGATAATTTGAAGGTGATATGGCACAATGAGCTCCATTCTGATTCCTTTTGCAAACTAAAGACACTGG AGGTTAGGCGTGGAAAGAATTTACTGAATATTTTCCCTTCCAGTATGCTGAGAAGATTCCATAATCTAGAGAATCTGAGTATAGCTGATTGTGATTCAAT AGAAGAGATTTTTGATCTCCAAGTGCTCATAAATGTGAAACAAAGACTTGCTGTTACAGCCACTCAATTGAGAGTTGTGCGTCTAATGAATCTTCCATAT CTGAAGCATGTTTGGAATACGGATCCACAAGGAATTCTTTCCTTCCATAACCTATGTACCGTGCATGTCCGGAGATGTCCTGGTCTAAGAAGTCTCTTTC CTGCCTCTATAGCCCAAACCCTTCTACAACTTGAAGAGCTTCAGATAGATACTTGTGGAGTGGAGGAAATTGTTGCAATGGATGAAGGACTAGGAGAAGG TCCTTCATCCTTTCGGTTTTGGTTTCCTAAAGTTACCCATCTGCATCTTGTGCAATTACCAGAACTACAGAGATTCTATCCAGGAATACATACATCAGAA TGGCCGAGGTTGAAAAACTTTCGGGTGTATGACTGTGAAAAAATTGAAATATTTCCTTCAGAAATCAAGTGCACTCACGAACCATGCAGGGAGGACCACA TGGACATCCAGGGTCAGCAACCACTTCTCTCATTTAGGAAGATCATCCCCAACTTGGAGCAATTAATTTTGGAAAGCAAGGATGCATCGGCATTATTGAA AGGCCTGTGTCCTCAAGACTTATTTCACAAACTCAAAGTTCTCGAGCTAATTTTCTTTCGTGATGCACATGCAACTTTTCCATTTGATCTCCTTCCAAGG TTCCCTAATATGGAAAAACTTATTGTGGGACGTAGTACGTTCAAAGAGTTGCTCCCGTCAAGACTTGATGGTATGGAGAAGCATGCAAGAGTTCTTTCAC CGATACGACACTTAGAGTTGGATTCTCTTCCTTGCCTAGAGCATTTATGGAAGAGCAATTCCCAACTGGACCAGGCTCTTCAAACTCTTCAAACTCTAAG GGTACGGAATGGCGGCAGTTTGATTTACTTAGCTCCATCGCGTGCTTCTTTCCAAAATCTAACAAATTTGTATGTGTGGAGATGCGAAAGATTAGTAATA TTGGTGACATCCACAACAGCAAAAAGTCTGGCGCAACTCACAAGAATGAGTATAAACTACTGCAGTATGGTTACCGAAATAGTAGCAAACGAGGGAGACG GAATAAAAGATGAGATTGTCTTCAGCAAATTAGAAAGATTAGAGCTTTATCGTTTACCAACCCTAACTAGCTTCTGCTCAGAAAAACACAGCTTTGATTT CCCATCTCTGGTAGAAGTAACTGTCGAAAAATGTCCTGAGATGAAGTTTTTCTCCAACGGAGCACTGAGCACTCCCAAGCTGCGGAGAGTTAATTTGACT AAAGTAGAGAAGAAAAATCTCAACACCACAATACAACAGTTGTCTACACAAACGAAAGCTCAAATTGCTGAAAGTTCATCATCGTAA
AA sequence Show only first row Show all	>Potri.005G041101.3 pacid=42805167 polypeptide=Potri.005G041101.3.p locus=Potri.005G041101 ID=Potri.005G041101.3.v4.1 annot-version=v4.1 MDIVISVVAKVAELLVVPIRRQIGYVVDCNTNIQNLKNEVEKLRDAKTRVIHSIEEARRNGEEIEVDVENWLRSVDGVIEGGGGVVGDESSKKCFMGLCP DLKIRYRLGKAAKKELPVVAVFQEKGKFERVSYRADPSGIGLVKDYEAFESRNSVLNAIVDALKDGGVNMVGVYGMGGVGKTTLVKKVAEQVKEGRLFDK VVLALVSHTPDIRRIQGEISDGLGFKLDAETDKGRASQLCGGLKKVTKVLVILDDIWKELKLEDVGIPSGSDHEGCKILMSSRNEYVLSREMGANKNFPV QVLPVREAWNFFVKMVGVTVKNPSVQLVAAEVAKRCAGLPILLATVARALKNKDLYAWKEALKQLTRFDKDEIDNQVYSCLELSYMALRGDEIKPLFLLC GQFPTYDTSISDLLKYAIGLDLFKGRSTLEEARNRLHTLVDELKASCLLLEGDFGGSVKMHDVVQSFAISVASRDHHVLIVADEFKEWPTNDVLQHYTAI SLPFRKIPDLPVILECPNLNSFLLLNKDPSLQIPDNFFREMKELKVLDLTGVNLSPLPSSLQFLENLQTLCLDHCVLEDISIVGELKKLKVLSLISSNIV CLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFVKWETEGPSSQRNNACLSELKLLSNLITLHMQVTDADNMPKDLFLCFQKLERFR IFIGDGWDWSVEDATSRTLKLKLYTVIQLEEWVKTLLKITEELHLQELNGVKSILNDLDGEGFPQLKHLHVQNCPGIQYIINSIRMGPRAAFLNLDSLFL ENLDNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSFSMARRLVRLEEITIIDCKIMEEVVAEESENDAADGEPIEFTQLRRLTLQCLPQFTSFHSNV EESSDSQRRQKLVASDARSKEIVAGNKLGTSMSLFNTRILFPNLEDLKLSSIKVEKIWHDQPAVQSPCVKNLASIVVENCSNLNYLLTSSMVERLAQLKR LEICNCKSMEEIVVPDGIGEGKMMSKMLFPKLLILELNGLPKLTRFCTSNLLECHFLKVLTLGNCPELKEFISIPSSADVPVMSKPDNTKSALFDDKVAF PDLEVFRIFDVDNLKVIWHNELHSDSFCKLKTLEVRRGKNLLNIFPSSMLRRFHNLENLSIADCDSIEEIFDLQVLINVKQRLAVTATQLRVVRLMNLPY LKHVWNTDPQGILSFHNLCTVHVRRCPGLRSLFPASIAQTLLQLEELQIDTCGVEEIVAMDEGLGEGPSSFRFWFPKVTHLHLVQLPELQRFYPGIHTSE WPRLKNFRVYDCEKIEIFPSEIKCTHEPCREDHMDIQGQQPLLSFRKIIPNLEQLILESKDASALLKGLCPQDLFHKLKVLELIFFRDAHATFPFDLLPR FPNMEKLIVGRSTFKELLPSRLDGMEKHARVLSPIRHLELDSLPCLEHLWKSNSQLDQALQTLQTLRVRNGGSLIYLAPSRASFQNLTNLYVWRCERLVI LVTSTTAKSLAQLTRMSINYCSMVTEIVANEGDGIKDEIVFSKLERLELYRLPTLTSFCSEKHSFDFPSLVEVTVEKCPEMKFFSNGALSTPKLRRVNLT KVEKKNLNTTIQQLSTQTKAQIAESSSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.005G041101 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.005G042900 [exp]	2.00	0.9434	Pt-RGA-II24.67
AT5G03860		MLS	malate synthase (.1.2)		Potri.012G094532 [exp]	3.74	0.9170
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.018G085600 [exp]	5.47	0.8939
AT4G27190			NB-ARC domain-containing disea...		Potri.001G423925 [exp]	6.00	0.9216
AT4G20930			6-phosphogluconate dehydrogena...		Potri.001G465600 [exp]	10.39	0.8792
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	11.87	0.7826
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429890 [exp]	12.36	0.9104
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Potri.008G130400 [exp]	14.73	0.8572	Pt-SULTR3.3
AT5G46550			DNA-binding bromodomain-contai...		Potri.011G077100 [exp]	19.28	0.7920
AT5G26250			Major facilitator superfamily ...		Potri.008G150800 [exp]	19.36	0.8659

Compare expression of checked genes

Potri.005G041101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.