Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RGA-II24.67
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 240 / 6e-65 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 238 / 1e-64 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 228 / 3e-61 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12280 177 / 6e-45 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 176 / 2e-44 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61190 167 / 8e-42 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 167 / 9e-42 RFL1 RPS5-like 1 (.1) AT1G12290 164 / 5e-41 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G63020 162 / 3e-40 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G10780 161 / 6e-40 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G042400 [exp] 2744 / 0 AT4G27220 234 / 4e-63 NB-ARC domain-containing disease resistance protein (.1) Potri.005G041101 [exp] 2718 / 0 AT4G27220 229 / 2e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.013G015700 [exp] 1670 / 0 AT4G27190 257 / 2e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.013G015900 [exp] 1588 / 0 AT4G27190 268 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) Potri.005G062130 [exp] 1223 / 0 AT4G27220 256 / 5e-70 NB-ARC domain-containing disease resistance protein (.1) Potri.013G027300 [exp] 1222 / 0 AT4G27190 244 / 8e-66 NB-ARC domain-containing disease resistance protein (.1) Potri.005G061860 [exp] 1215 / 0 AT4G27220 230 / 1e-61 NB-ARC domain-containing disease resistance protein (.1) Potri.019G036875 [exp] 1078 / 0 AT4G27190 178 / 9e-45 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426200 [exp] 484 / 1e-144 AT4G27190 288 / 1e-80 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 83 / 2e-15 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 82 / 2e-15 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 75 / 6e-13 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028639 [exp] 74 / 8e-13 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 73 / 2e-12 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 72 / 4e-12 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 68 / 8e-11 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002247 [exp] 66 / 3e-10 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014922 [exp] 66 / 3e-10 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 64 / 1e-09 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.005G042900.6 pacid=42802942 polypeptide=Potri.005G042900.6.p locus=Potri.005G042900 ID=Potri.005G042900.6.v4.1 annot-version=v4.1 ATGGAAATTGTGATTTCTATTGTAGCCAAAGTTGCTGAGCTGTTAGTTGTTCCCATTAAGAGACAGATTGGTTATGTAATTGATTGCAATACCAATATTC AGAACTTGAAAAATGAAGTTGAGAAGTTGACATATGCAAAAACAAGGGTGATTCATTCTATAGAGGAGGCTATAAGTAAAGGGGAAGAGATTGAAGTTGA CGTTGAGAACTGGCTGGGAAGTGTTGATGGGGTCATTGAAGGGGGATGCGGTGTTGTTGGAGATGAATCAAGTAAGAAGTGCTTCATGGGTTTGTGTCCT GATCTAAAGATACGTTATCGGTTGGGTAAAGCAGCGAAGGAGGAGTTGACGGTTGTTGTTGATCTCCAGGAAAAAGGGAAATTTGATAGAGTTTCTTACC GTGCTGCTCCATCGGGTATAGGGCCTGTCAAGGATTATGAGGCCTTTGAATCAAGAAATTCTGTATTAAATGATATTGTGGATGCATTGAAGGATGGTGA CGTGAACATGGTTGGGGTATATGGGATGGGTGGTGTGGGGAAGACCACACTTGTGAACAAGGTTGCTGAACAAGTCAAGGAGGGCAGGCTGTTCGATAAG GTGGTTCTGGCACTTGTGTCACCTACTCCAGACATCAGAAGAATTCAAGGTGAAATAGCAGATGGGCTGGGACTCAAATTGGATGCAGAGACTGATAAAG GAAGGGCAAGTCAACTATGCAGGGGATTGAAGAAAGTGACTACAGTACTTGTAATTCTTGATGATATTTGGAAAGAACTTAAATTGGAGGATGTCGGAAT CCCTTCAGGGAGCGATCATGAAGGATGCAAGATACTCATGACTTCAAGAAATAAAAATATACTGTCTCGGGAGATGGGCGCAAACAGAAATTTCCAGATT CAAATTTTGCCTGTAAGAGAAGCATGGAATTTTTTCGAAAAGATGGTGGGGGTTACTGTTAAAAATCCTAGTGTACAACTTGTTGCTGCTGAAGTAGCCA AAAGATGTGCCGGTTTGCCGATTTTACTTGCTACAGTTGCTAGGGCACTGAAAAACGAAGATTTATATGCTTGGAAGGAAGCCTTGACACAGCTAACAAG GTTTGATAAAGATGATATTGACAAAACAGCTTACTCGTGTCTGGAACTGAGTTACAAAGCTTTGAGAGATGATGAAATCAAGTCATTGTTCTTGCTTTGT GGGCAAATCTTAACTTATGATGCTTTAATCTCAGACTTGTTAAAGTATGCTATAGGCTTGGATTTGTTCAAGGGACGTTCCACATCGGAAGAAGCAAGAA ACAGACTGCATACATTGGTGGATGAACTTAAAGCCTCTTGTTTGTTGCTAGAAGGTGACAATGATGGAAGCGTGAAAATGCATGATGTTGTTCGAAGTTT TGCCATCTCTGTTGCATTAAGGGACCACCATGTGCTTATCGTGGCAGATGAATTCAAAGAATGGCCAACCAATGATGTGCTTCAACAGTACACTGCAATC TCTTTGCCTTTCCGGAAAATTCCTGATCTTCCTGCGATATTAGAATGTCCAAATCTCAATTCGTTTCTACTGCTGAGCACGGATCCCTCACTGCAAATAC CAGAAAACTTTTTCAGAGAAATGAAGGAGCTTAAAGTCTTGGATCTGACAGGAGTTAATCTTTCACCACTGCCTTCGTCACTTCAATTTCTTGAGAACCT TCAAACGCTGTGTTTGGATTTTTGTGTTTTGGAAGATATATCTATAGTTGGAGAGCTAAAGAAGTTGAAAGTTCTCAGCTTAATGGGTTCTGATATTGTT TGTTTGCCAAGAGAAATAGGAAAATTGACTCGTCTGCTACTTCTAGATTTGAGCAATTGTGAAAGGCTTGAAGTAATATCACCAAATGTCCTTTCTTCCT TGACCCGGCTAGAAGAATTATATATGGGAAACAGCTTTCTGAAATGGGAGGCTGAAGGACCAAGCAGTGAAAGAAACAGTGCTTGCCTGTCAGAATTGAA GCTTCTGGCAAACTTAATTACCTTAGACATGCAAATTACAGATGCAGATCATATGCCCAAGGACTTGTTTTTGTGCTTTCAAAAGTTGGAAAGGTTCAGA ATATTTATTGGAGATGGGTGGGACTGGTCTGTTAAGTATGCAACCTCAAGAACTTTGAAACTCAAGCTCAATACAGTTATTCAGTTGGAGGAGCGGGTGA ACACGCTGCTGAAGATCACTGAAGAACTTCATTTGCAAGAACTGAATGGTGTTAAGAGTATCCTCAATGACTTGGATGAGGAAGGTTTCTGTCAGCTGAA GGATCTTCACGTCCAAAATTGTCCTGGAGTTCAATATATCATCAACTCGATGAGGATGGGTCCTCGAACTGCTTTTCTGAACTTGGACTCACTGTTTCTT GAAAATTTGGATAACTTGGAGAAGATCTGCCATGGCCAACTTATGGCAGAGTCGCTTGGAAACTTGAGAATTTTGAAGGTAGAAAGTTGTCATAGGTTGA AGAATTTATTTTCAGTCTCCATTGCAAGAAGAGTTGTGCGACTTGAAGAAATCACAATAATTGATTGCAAGATCATGGAAGAGGTTGTTGCTGAGGAAAG TGAGAATGATACTGCTGACGGTGAACCGATAGAGTTCACTCAATTACGTAGACTGACACTGCAATGTCTGCCTCAGTTCACAAGCTTTCACTCTAATAGA AGGCAGAAGCTATTAGCAAGTGATGTGAGGTCAAAAGAAATTGTTGCGGGGAATGAGCTTGGGACTTCCATGTCACTTTTCAATACAAAGATTTTATTCC CCAAGTTGGAGGACCTGATGCTCTCCTCCATCAAAGTGGAAAAGATATGGCATGACCAACATGCTGTGCAGCCTCCCTGTGTTAAAAACTTAGCAAGCAT TGTGGTGGAGAGTTGTAGCAATTTAAACTATTTATTGACATCTTCTATGGTCGAAAGTCTTGCTCAACTCAAAAGTCTTGAAATATGTAATTGCAAGTCC ATGGAAGAAATAGTTGTTCCAGAAGGAATCGGAGAAGGTAAAATGATGAGCAAGATGCTATTCCCTAAACTACACATCCTATCGCTCATTCGTCTACCAA AACTCACAAGATTCTGCACCAGTAACTTGCTTGAATGCCACTCCCTGAAAGTGCTGACGTTAGGGAAATGCCCTGAACTGAAGGAATTTATTTCCATCCC ATCAAGTGCAGATGTCCCTGCCATGAGCAAACCTGACAACACAAAATCAGCTCTCTTCGATGACAAGGTTGCATTCCCTAACTTGGTGGTATTTGTAAGT TTCGAAATGGATAATTTGAAGGTGATATGGCACAATGAACTCCATCCTGATTCCTTTTGCAGACTGAAGATACTGCATGTTGGGCATGGAAAGAATTTAC TGAATATTTTCCCTTCCAGTATGCTGGGAAGATTCCATAATCTAGAGAATCTGGTTATAAATGATTGTGATTCAGTAGAAGAGATTTTTGATCTCCAAGC GCTCATAAATGTGGAACAAAGACTTGCTGTTACAGCCTCTCAATTGAGAGTTGTGCGTCTAACGAATCTTCCACACCTGAAGCATGTTTGGAATAGGGAT CCACAAGGAATTGTTTCCTTCCATAACCTATGTACCGTGCATGTCCAGGGATGTCTTGGTCTAAGAAGTCTCTTCCCTGCCTCTATAGCCCAAAACCTTC TACAACTTGAATTGCTTCGGATAGATACCTGTGGAGTGGAGGAAATTGTTGCGAAGGATGAAGGACTAGAAGAAGGTCCTGAGTTTGTGTTTCCTAAAGT TACCTTTCTGCAGCTTCGGGAATTACCAGAACTAAAGAGATTCTATCCAGGAATACATACATCAGAATGGCCGAGGTTGAAAACGCTTCGGGTGTATGAC TGTGAGAAAATTGAAATATTTCCTTCAGAAATCAAGTGCTCTCACGAACCATGCAGGGAGGACCACATGGACATCCAGGGTCAGCAACCACTTCTCTCAT TTAGGAAGATCATCCCCAACTTGGAGGATTTACATTTGGAAAGCAAGGATGCATCGGCATTATTGAAATGTCCTCAATACTTCTTTCACAAACTCAAAGT TCTGGAACTATTTTGCTTTGGTGATGCACATGCAACTTTTCTATTTGATCTCCTTCCAAGGTTCCCTAATATGGAAAGACTTAATGTGGAACGTGGTACG TTCAAAGAGTTGCTCCCGTCTAGACTTGTTGGTATGGAGGAGCATGCAACAGTTCTTTCACCGATACGACACTTGGAGTTGGATTCTCTCCCTTGCCTAG AGCATTTATGGAAGAGCAATTCCCAACTGGACCAAGCTCTTCAAACTCTTGAAACTCTAAGGGTACATAATTGCGGCAGTTTGATTTATTTAGCTCCATC GCGTGCTTCTTTCCAAAATCTAACAAATTTGTATGTGTGGAGATGCGAAAGATTAGTAAAATTGGTGACATCCACAACAGCAAAAAGTCTGGCGCAACTC ACAAGAATGAAAGTAGCGGGCTGCAGAATGGTTACCGAAATAGTAGCAAACGAGGAAGAGGGAATAAAAGATGAGATTGTCTTCAGAAAATTAGAAATAT TAGAGCTTCATCGTTTACCAAGCCTAACTAGCTTTTGCTCAGAAAAACACAGCTTTGATTTCCCATCTCTGGTAGAAGTAACTGTCAGTCAATGTCCTGA GATGAAGTTTTTCTCCAACGGAGCACTGAGCACTCCCAAGCTGCGGACAGTTAATTTGACTGAAGAAGAGAAGAAAGGATCCTGGGTTGGAAATCTTAAC ACCACAATACAACAGTTGTCTACACAAACGGAAGTATCATCGTAA
AA sequence Show only first row Show all	>Potri.005G042900.6 pacid=42802942 polypeptide=Potri.005G042900.6.p locus=Potri.005G042900 ID=Potri.005G042900.6.v4.1 annot-version=v4.1 MEIVISIVAKVAELLVVPIKRQIGYVIDCNTNIQNLKNEVEKLTYAKTRVIHSIEEAISKGEEIEVDVENWLGSVDGVIEGGCGVVGDESSKKCFMGLCP DLKIRYRLGKAAKEELTVVVDLQEKGKFDRVSYRAAPSGIGPVKDYEAFESRNSVLNDIVDALKDGDVNMVGVYGMGGVGKTTLVNKVAEQVKEGRLFDK VVLALVSPTPDIRRIQGEIADGLGLKLDAETDKGRASQLCRGLKKVTTVLVILDDIWKELKLEDVGIPSGSDHEGCKILMTSRNKNILSREMGANRNFQI QILPVREAWNFFEKMVGVTVKNPSVQLVAAEVAKRCAGLPILLATVARALKNEDLYAWKEALTQLTRFDKDDIDKTAYSCLELSYKALRDDEIKSLFLLC GQILTYDALISDLLKYAIGLDLFKGRSTSEEARNRLHTLVDELKASCLLLEGDNDGSVKMHDVVRSFAISVALRDHHVLIVADEFKEWPTNDVLQQYTAI SLPFRKIPDLPAILECPNLNSFLLLSTDPSLQIPENFFREMKELKVLDLTGVNLSPLPSSLQFLENLQTLCLDFCVLEDISIVGELKKLKVLSLMGSDIV CLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFLKWEAEGPSSERNSACLSELKLLANLITLDMQITDADHMPKDLFLCFQKLERFR IFIGDGWDWSVKYATSRTLKLKLNTVIQLEERVNTLLKITEELHLQELNGVKSILNDLDEEGFCQLKDLHVQNCPGVQYIINSMRMGPRTAFLNLDSLFL ENLDNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSIARRVVRLEEITIIDCKIMEEVVAEESENDTADGEPIEFTQLRRLTLQCLPQFTSFHSNR RQKLLASDVRSKEIVAGNELGTSMSLFNTKILFPKLEDLMLSSIKVEKIWHDQHAVQPPCVKNLASIVVESCSNLNYLLTSSMVESLAQLKSLEICNCKS MEEIVVPEGIGEGKMMSKMLFPKLHILSLIRLPKLTRFCTSNLLECHSLKVLTLGKCPELKEFISIPSSADVPAMSKPDNTKSALFDDKVAFPNLVVFVS FEMDNLKVIWHNELHPDSFCRLKILHVGHGKNLLNIFPSSMLGRFHNLENLVINDCDSVEEIFDLQALINVEQRLAVTASQLRVVRLTNLPHLKHVWNRD PQGIVSFHNLCTVHVQGCLGLRSLFPASIAQNLLQLELLRIDTCGVEEIVAKDEGLEEGPEFVFPKVTFLQLRELPELKRFYPGIHTSEWPRLKTLRVYD CEKIEIFPSEIKCSHEPCREDHMDIQGQQPLLSFRKIIPNLEDLHLESKDASALLKCPQYFFHKLKVLELFCFGDAHATFLFDLLPRFPNMERLNVERGT FKELLPSRLVGMEEHATVLSPIRHLELDSLPCLEHLWKSNSQLDQALQTLETLRVHNCGSLIYLAPSRASFQNLTNLYVWRCERLVKLVTSTTAKSLAQL TRMKVAGCRMVTEIVANEEEGIKDEIVFRKLEILELHRLPSLTSFCSEKHSFDFPSLVEVTVSQCPEMKFFSNGALSTPKLRTVNLTEEEKKGSWVGNLN TTIQQLSTQTEVSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.005G042900 [exp]	0	1	Pt-RGA-II24.67
AT4G27220			NB-ARC domain-containing disea...		Potri.005G041101 [exp]	2.00	0.9434
AT5G46550			DNA-binding bromodomain-contai...		Potri.011G077100 [exp]	5.29	0.8205
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.006G263400 [exp]	5.38	0.8201
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.018G085600 [exp]	5.65	0.8853
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	13.26	0.7823
AT4G27190			NB-ARC domain-containing disea...		Potri.001G423925 [exp]	14.42	0.8724
AT5G03860		MLS	malate synthase (.1.2)		Potri.012G094532 [exp]	14.45	0.8587
AT1G17450			B-block binding subunit of TFI...		Potri.003G064000 [exp]	16.97	0.8160
AT3G24150			unknown protein		Potri.006G067100 [exp]	17.14	0.8076
AT4G27190			NB-ARC domain-containing disea...		Potri.001G432366 [exp]	18.73	0.8363

Compare expression of checked genes

Potri.005G042900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.