Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13650 534 / 0 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G07290 430 / 2e-150 GONST2 golgi nucleotide sugar transporter 2 (.1) AT4G32272 79 / 6e-16 Nucleotide/sugar transporter family protein (.1.2) AT1G76340 70 / 7e-13 GONST3 golgi nucleotide sugar transporter 3 (.1) AT1G77610 68 / 2e-12 EamA-like transporter family protein (.1) AT1G21870 66 / 8e-12 GONST5 golgi nucleotide sugar transporter 5 (.1) AT4G31600 62 / 2e-10 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT2G28315 47 / 1e-05 Nucleotide/sugar transporter family protein (.1) AT3G10290 44 / 0.0001 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106400 [exp] 756 / 0 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G044000 [exp] 432 / 8e-151 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.018G127400 [exp] 96 / 4e-22 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.018G026600 [exp] 83 / 2e-17 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.006G255400 [exp] 80 / 3e-16 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.002G084500 [exp] 69 / 6e-13 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.008G177700 [exp] 69 / 2e-12 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.005G177200 [exp] 67 / 5e-12 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.010G057600 [exp] 66 / 8e-12 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024126 [exp] 637 / 0 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005387 [exp] 501 / 1e-178 AT2G13650 394 / 5e-138 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 421 / 1e-146 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10001205 [exp] 384 / 1e-131 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1) Lus10038090 [exp] 79 / 3e-16 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10017759 [exp] 76 / 9e-15 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 75 / 1e-14 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10006645 [exp] 72 / 8e-14 AT4G32272 359 / 2e-123 Nucleotide/sugar transporter family protein (.1.2) Lus10042700 [exp] 71 / 2e-13 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10018311 [exp] 66 / 8e-12 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.005G062900.1 pacid=42803540 polypeptide=Potri.005G062900.1.p locus=Potri.005G062900 ID=Potri.005G062900.1.v4.1 annot-version=v4.1 ATGGGTACAAGGTCTATTTCTTTGGATTCTCCCGATTCTCTTTATGAAAGGAATCTCATAGATGATTCAGATAAGGTTAACCGAAATGAGGAAAGAATCC TGAAACTTCACGAGTCAAACGGGGTGGTGGAACAGACCTCAAGTCCATTAAAAAGAGAAGTAATTAACAGGCTATCTTATTCTTTTTCAATGAAATCTCA TGAGAATGATGAAATTGACTTGGAAGGCGGCAAGTTGGTAAAAGATAAAGATAAGCCAACACGTAGTAAAGGTGTAATTAGAATACAGAATCAGGCCTTA TTTTCTGGCATTGCTTATTGCATTTCCTCCTGCAGCATGATACTGGTTAACAAATATGTGCTTTCCAGTTATGATTTTAATGCTGGGATTTCATTGATGC TTTACCAGAATTTCATCTCAGTTATTATTGTGTCAACGTTGAGATTTCTGGGTGTAATATCAACAGAACCTCTAACTTGGAGATTGATTAAGGTCTGGCT GCCTGTAAACTTTATATTTGTCGGGATGCTCATCACAAGCATGTTTAGTTTGAAATACATCAATGTTGCCATGGTCACAGTCCTGAAGAATGTTACTAAT GTCATAACTGCTCTTGGTGAAATGTATCTATTCCAAAAGGACCATGACAGTAGAGTATGGGCTGCTCTGTTTTTAATGATTATATCAGCCATTTCTGGAG GAATTACTGATCTCTCTTTCCATGCTGTTGGCTATGCGTGGCAGATCCTTAACTGTTTCCTAACAGCATCTTATTCGCTGACTCTACGCAGGGTTATGGA TACAGCCAAGCAAGTCACAAAATCTGGAAACTTGAATGAGTTTTCAATGGTTATGCTAAATAATACCCTTTCTTTGCCACTGGGGCTTATTCTTATTTTT GTTTTCAATGAAGTGGACTATCTCTCCAGAACACCACTTTTGAGGTTACCTACCTTTTGGTTGGTTGTGACGTTAAGTGGTTTTTTGGGTCTGGCAATTA GCTTCACTTCTATGTGGTTTCTTCATCAAACAGGGGCTACCACATATAGTCTTGTGGGGTCACTGAACAAGATTCCTCTGTCTGTCGCCGGCATCCTTCT GTTTCACGTGCCCACCAGTTTGCAAAACTCAGCAAGCATTTTATTCGGTCTTCTGGCAGGAGTGATTTTTGCTAGAGCCAAAATGCGAGAGAGATCTTAG
AA sequence Show only first row Show all	>Potri.005G062900.1 pacid=42803540 polypeptide=Potri.005G062900.1.p locus=Potri.005G062900 ID=Potri.005G062900.1.v4.1 annot-version=v4.1 MGTRSISLDSPDSLYERNLIDDSDKVNRNEERILKLHESNGVVEQTSSPLKREVINRLSYSFSMKSHENDEIDLEGGKLVKDKDKPTRSKGVIRIQNQAL FSGIAYCISSCSMILVNKYVLSSYDFNAGISLMLYQNFISVIIVSTLRFLGVISTEPLTWRLIKVWLPVNFIFVGMLITSMFSLKYINVAMVTVLKNVTN VITALGEMYLFQKDHDSRVWAALFLMIISAISGGITDLSFHAVGYAWQILNCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVMLNNTLSLPLGLILIF VFNEVDYLSRTPLLRLPTFWLVVTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFHVPTSLQNSASILFGLLAGVIFARAKMRERS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.005G062900 [exp]	0	1
AT5G45190			Cyclin family protein (.1.2)		Potri.002G032300 [exp]	1.41	0.8316
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	3.16	0.8305	MBD905,Pt-MBD5.1
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.008G159300 [exp]	6.48	0.8021	Pt-SCAM.1
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Potri.010G045500 [exp]	7.74	0.7583
AT3G19970			alpha/beta-Hydrolases superfam...		Potri.007G075400 [exp]	12.80	0.8003
AT2G27480			Calcium-binding EF-hand family...		Potri.009G163600 [exp]	17.54	0.7818
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	27.92	0.7990
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Potri.001G252100 [exp]	29.12	0.6960
AT2G46080			unknown protein		Potri.008G085600 [exp]	29.59	0.7955
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	30.00	0.7604

Compare expression of checked genes

Potri.005G062900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.