Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34670 290 / 3e-96 MYB ATMYB93 myb domain protein 93 (.1) AT5G10280 279 / 2e-92 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT5G16770 270 / 8e-89 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 263 / 3e-86 MYB ATMYB107 myb domain protein 107 (.1) AT5G65230 256 / 8e-84 MYB ATMYB53 myb domain protein 53 (.1) AT4G21440 241 / 3e-77 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G15310 237 / 4e-76 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 232 / 2e-73 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT4G17785 231 / 3e-73 MYB ATMYB39 myb domain protein 39 (.1) AT4G05100 229 / 6e-73 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093900 [exp] 485 / 1e-173 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 333 / 9e-114 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.002G096800 [exp] 324 / 3e-110 AT1G34670 305 / 2e-102 myb domain protein 93 (.1) Potri.019G050900 [exp] 254 / 1e-82 AT5G16770 279 / 2e-92 myb domain protein 9 (.1.2) Potri.004G033100 [exp] 242 / 2e-77 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 237 / 6e-76 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.017G086300 [exp] 239 / 7e-76 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.010G165700 [exp] 237 / 2e-75 AT3G01140 302 / 3e-100 NOECK, myb domain protein 106 (.1) Potri.011G041600 [exp] 236 / 3e-75 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041142 [exp] 295 / 6e-99 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 293 / 6e-98 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10033003 [exp] 239 / 4e-76 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10039743 [exp] 227 / 2e-73 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018418 [exp] 229 / 7e-73 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10026620 [exp] 226 / 4e-72 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10014784 [exp] 224 / 1e-71 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10030378 [exp] 224 / 2e-71 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10040139 [exp] 221 / 2e-71 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10002593 [exp] 224 / 3e-71 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G074500.1 pacid=42802773 polypeptide=Potri.005G074500.1.p locus=Potri.005G074500 ID=Potri.005G074500.1.v4.1 annot-version=v4.1 ATGGGAAGATCTCCTTGTTGTGACGAGAGTGGCCTCAAGAAAGGTCCCTGGACCCCTGAGGAAGATCAAAAACTCGTCAAATATATCCAAAAGCATGGCC ATGGAAGCTGGAGAGCCCTCCCTAAACTTGCTGGTCTTAACAGATGTGGAAAAAGTTGCAGGTTAAGGTGGACAAACTATTTAAGGCCAGATATCAAGCG AGGAAAATTTTCCCAAGAAGAAGAACAAACAATTCTAAATCTCCATTCCATCCTTGGCAACAAATGGTCAGCAATTGCTGGCCACCTACCGGGGCGGACC GATAATGAAATCAAGAATTTCTGGAACACCCACCTGAAGAAAAAACTCATTCAAATGGGTTTTGATCCTATGACTCACCGGCCTCGAACTGATATATTCT CAAGCTTACCTCATCTTATAGCCCTAGCTAACCTGAAGGAACTCATAGATCATCATTCATTGGAAGAACATGCTCTCAGACTGCAAACAGAAGCTGCACA AATGGCAAAACTTCAATATTTGCAGTATCTCCTTCAACCTCAGCCTCCTGCAGCTTCTAATAATGCAACAAGCTCAAACAACCTAAACAATATCAGTGCT ATTGGTGAAATGGAAGCTTTTAATCTCTTGAATTCACTTGCTTCATTCAAGGATAGCCCAGTGTCAAGTTTATCCCAGTTTGATTTATCAGCTTCCTCTC TTCAAGGGATCAATGATTTAATGCCCTTCTCTCATTTGCCTGACTTACAAATCCCTTGCAACTATCAAACACCACCAAACAAGGACGTGTTTGATCAAGC TCCTGAATTGACAGTGTTTAGTCAAGGAGAGAACTCACCCAATTCTCCATGGCAGCTTCCTTCATCTTCAACTCCATCTCCTCCTTCAGTATTTCCACTT GTACCACAGAATAGTGGCATGGTCAACAACTTGGGAGATGCCTCTAGCACTTCAAGCTACGTAGGAGAAGCTCCTTCAGTTTGGCATGACATCCTTGAAA ATCCTTTGTTTCATGATATTGCTTAG
AA sequence Show only first row Show all	>Potri.005G074500.1 pacid=42802773 polypeptide=Potri.005G074500.1.p locus=Potri.005G074500 ID=Potri.005G074500.1.v4.1 annot-version=v4.1 MGRSPCCDESGLKKGPWTPEEDQKLVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWSAIAGHLPGRT DNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDIFSSLPHLIALANLKELIDHHSLEEHALRLQTEAAQMAKLQYLQYLLQPQPPAASNNATSSNNLNNISA IGEMEAFNLLNSLASFKDSPVSSLSQFDLSASSLQGINDLMPFSHLPDLQIPCNYQTPPNKDVFDQAPELTVFSQGENSPNSPWQLPSSSTPSPPSVFPL VPQNSGMVNNLGDASSTSSYVGEAPSVWHDILENPLFHDIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.005G074500 [exp]	0	1
AT5G07475			Cupredoxin superfamily protein...		Potri.001G080700 [exp]	11.00	0.8911
AT5G25050			Major facilitator superfamily ...		Potri.006G266000 [exp]	20.78	0.8178
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Potri.010G181000 [exp]	20.97	0.8876
AT3G04440			Plasma-membrane choline transp...		Potri.019G040500 [exp]	21.09	0.8860
AT3G29034			unknown protein		Potri.010G234200 [exp]	25.21	0.8876
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Potri.012G068700 [exp]	30.39	0.8871
AT5G67400		RHS19	root hair specific 19 (.1)		Potri.017G064100 [exp]	33.40	0.8237
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.012G056300 [exp]	33.76	0.8848
AT2G39430			Disease resistance-responsive ...		Potri.008G049100 [exp]	37.97	0.8845
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.011G145000 [exp]	41.35	0.8840	Pt-HMGR3.2

Compare expression of checked genes

Potri.005G074500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.