Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10180 827 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 708 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) AT4G08620 566 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G22150 556 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT3G51895 548 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT1G78000 527 / 2e-180 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT3G15990 493 / 4e-167 SULTR3;4 sulfate transporter 3;4 (.1) AT4G02700 474 / 7e-160 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT5G19600 467 / 4e-157 SULTR3;5 sulfate transporter 3;5 (.1) AT1G23090 463 / 1e-155 SULTR3;3, AST91 sulfate transporter 91 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088700 [exp] 1063 / 0 AT5G10180 837 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Potri.002G092400 [exp] 802 / 0 AT1G77990 826 / 0.0 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) Potri.005G167300 [exp] 597 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 567 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.010G082700 [exp] 533 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 522 / 2e-178 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 505 / 7e-172 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 505 / 8e-172 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 470 / 4e-158 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016806 [exp] 843 / 0 AT5G10180 889 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Lus10022502 [exp] 769 / 0 AT5G10180 798 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Lus10041111 [exp] 563 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 558 / 0 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10029616 [exp] 558 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 531 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 524 / 7e-178 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10035897 [exp] 457 / 7e-153 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 457 / 1e-152 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10034603 [exp] 457 / 2e-152 AT1G23090 953 / 0.0 sulfate transporter 91 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00916 [poplar] [flax] Sulfate_transp Sulfate permease family CL0502 [poplar] [flax] STAS PF01740 [poplar] [flax] STAS STAS domain
Representative CDS sequence Show only first row Show all	>Potri.005G079000.2 pacid=42804407 polypeptide=Potri.005G079000.2.p locus=Potri.005G079000 ID=Potri.005G079000.2.v4.1 annot-version=v4.1 ATGGCTTCTTCGGCCATTGAAACAGATGGTCAAGAAATCCTTGACCTTGAGAAAAATAGGCAGGCTGAAATGTCTCAGTGGGTGCTCAATGCTCCTGAGC CACCTAGCCTGTGGCGAGAGCTCATGGATTCCGCCAGGGAAACTGTCTTGCCTCGTGGCAAGAGATTTCCATATCTCAAGGACAAGGATGGCCTTTCCAA GACAGTAATTTCAGTCCTGCAGGCAATGTTTCCTATCTTTAGTTGGTGCCGGCACTACAACGCAACAAAACTCAGGAACGATCTTTTGGCGGGTCTAACT CTCGCTAGTCTCTGCATTCCTCAGAGTATTGGATATGCAACTCTAGCGAAGCTTGATCCCCAATATGGCCTCTATACAAGTGTTATTCCACCTCTCATTT ATGCTGTAATGGGAACTTCAAGGGACATAGCAATTGGACCAGTGGCTGTGGTTTCACTGCTTATGTCTTCGATGGTTCCGAAACTAGAAGATCCTGAGGC TAATCCAATTGCCTACAGAAATCTTGTTCTTACCACAACCTTTTTTGCAGGAATTTTTCAAGCTGCATTTGGACTATTTAGGTGGCTGGGTTTCCTTGTG GATTTTCTCTCCCATGCTGCAATTGTTGGGTTTGTGTCAGGGGCAGCCATTGTCATCGGTCTTCAACAAATGAAAGGACTACTTGGGATTGCTCATTTCA CAAATAAGACTGATGTTATCTCTGTAATGCAAGCTATTTGGAGATCAGTTCATCAGTATTGGAATCCGCATAATTTTATACTCGGATGCTCATTCTTAAG TTTTATTAAATTAACCAGATTTGTGGGTAAAAGGAATAGGAAACTCTTCTGGCTGCCTGCAACTGCTCCTTTGATTTCTGTTGTTCTCTCAACTCTTCTA GTTTATCTGACCAGAGCTGATAAACATGGGGTAATGATTATAAAACACATTAAAAAGGGCTTAAACCCAGGCTCAATCCATGAGTTGCAGTTCAATAACC CACACATCGGAGAAGTTGCTAAAACTGGACTTATAGTCGCTGTCATTGCGATCACTGAAGCAACTGCAGTAGGCCGATCTTTTGCATCCATAAAAGGATA CCACATCAATGGAAACCAAGAAATGGTGGCCTTTGGATTTATGAACATTCTGGGGTCTTTCACTTCTTGCTATGTAGCAACTGGTTCATTCTCGCGCAGT GCTGTAAATTTCAGTGCTGGATGTGAAACTGCAATGTCAAATATTGTGATGGCCATTACTGTGATCATATCTCTGGAATTGTTCACAAGGCTTTTGTACT TTACTCCCATCGCAGTCCTTTCTGCAATCATTCTTTCTGCTTTACCTGGGCTCGTTGACCCTCATGAAGCATACTATATATGGAAGGTTGATAAGCTAGA TTTTCTTGTTTGTATTGGGGCCTTCTTTGGGGTATTATTTGCATCGGTGGAGATCGGTCTTCTAGCTGCGGTGATAATATCTTTTGTGAAGATCATTATA TTCTCAATCAGACCAGGCACAGAAGAACTTGGAAGACTCCCTGGAACTGACATTTTTTGTGATGTCAATCAATATCCTATGGCTGTTAAGAATTCCAAGG CTCTCATAATCCGTGTTAAGTCTGGTTTGCTCTGTTTTGCAAATGCCAACTTTGTCAAAGAAAAGATCATGAAATGGGCAACGGAAGAGGAAGAGAACGA CAGTCAAGGGAAAAGGACTGTTCAAGTTGTGATTCTTGACATGTCCAATTTAATGAACATTGATATGTCGGGAATAGCTTCCCTGTTGGAATTGCAAAAC AATCTGGCCTCGGGTGGAATGGAGCTAGCCATAACAAACCCTAAGTGGCAAGTGATTCACAAGCTAAGGCTAGCCAACTTTGTGACGAAAATGGGAGGAA GGGTCTTCTTGACAGTTGGAGAAGCTGTGGATGCGTGTCTGGGCGCCAAAATGGCTGCTGTTTAA
AA sequence Show only first row Show all	>Potri.005G079000.2 pacid=42804407 polypeptide=Potri.005G079000.2.p locus=Potri.005G079000 ID=Potri.005G079000.2.v4.1 annot-version=v4.1 MASSAIETDGQEILDLEKNRQAEMSQWVLNAPEPPSLWRELMDSARETVLPRGKRFPYLKDKDGLSKTVISVLQAMFPIFSWCRHYNATKLRNDLLAGLT LASLCIPQSIGYATLAKLDPQYGLYTSVIPPLIYAVMGTSRDIAIGPVAVVSLLMSSMVPKLEDPEANPIAYRNLVLTTTFFAGIFQAAFGLFRWLGFLV DFLSHAAIVGFVSGAAIVIGLQQMKGLLGIAHFTNKTDVISVMQAIWRSVHQYWNPHNFILGCSFLSFIKLTRFVGKRNRKLFWLPATAPLISVVLSTLL VYLTRADKHGVMIIKHIKKGLNPGSIHELQFNNPHIGEVAKTGLIVAVIAITEATAVGRSFASIKGYHINGNQEMVAFGFMNILGSFTSCYVATGSFSRS AVNFSAGCETAMSNIVMAITVIISLELFTRLLYFTPIAVLSAIILSALPGLVDPHEAYYIWKVDKLDFLVCIGAFFGVLFASVEIGLLAAVIISFVKIII FSIRPGTEELGRLPGTDIFCDVNQYPMAVKNSKALIIRVKSGLLCFANANFVKEKIMKWATEEEENDSQGKRTVQVVILDMSNLMNIDMSGIASLLELQN NLASGGMELAITNPKWQVIHKLRLANFVTKMGGRVFLTVGEAVDACLGAKMAAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Potri.005G079000 [exp]	0	1
AT3G50120			Plant protein of unknown funct...		Potri.006G042500 [exp]	4.00	0.9444
AT3G18670			Ankyrin repeat family protein ...		Potri.005G057900 [exp]	4.58	0.9448
AT3G18670			Ankyrin repeat family protein ...		Potri.011G015700 [exp]	5.91	0.9338
AT5G62200			Embryo-specific protein 3, (AT...		Potri.010G214400 [exp]	6.92	0.9444
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	8.48	0.9378
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	9.38	0.9286
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G053000 [exp]	10.24	0.9313
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.015G101500 [exp]	12.64	0.8995
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.012G090400 [exp]	12.72	0.9333
					Potri.018G104500 [exp]	12.72	0.9274

Compare expression of checked genes

Potri.005G079000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.