Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50080 88 / 3e-20 AP2_ERF ERF110 ethylene response factor 110 (.1) AT2G33710 87 / 4e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G61890 86 / 3e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G43160 84 / 3e-19 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT5G13330 84 / 4e-19 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G64750 87 / 5e-19 AP2_ERF ABR1 ABA REPRESSOR1, Integrase-type DNA-binding superfamily protein (.1) AT5G07310 81 / 2e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G47520 75 / 6e-16 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT3G16770 74 / 5e-15 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT1G72360 72 / 1e-14 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076800 [exp] 340 / 9e-117 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G195000 [exp] 96 / 5e-22 AT5G50080 108 / 5e-27 ethylene response factor 110 (.1) Potri.003G162500 [exp] 85 / 5e-19 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.001G067600 [exp] 84 / 1e-18 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.012G108500 [exp] 81 / 1e-17 AT5G61890 144 / 3e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.001G163700 [exp] 79 / 4e-16 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.002G065600 [exp] 77 / 1e-15 AT5G50080 88 / 6e-20 ethylene response factor 110 (.1) Potri.010G006800 [exp] 76 / 1e-15 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.019G131300 [exp] 75 / 5e-15 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005805 [exp] 90 / 5e-20 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10006796 [exp] 88 / 2e-19 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10022426 [exp] 83 / 6e-18 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10016827 [exp] 81 / 2e-17 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10037487 [exp] 78 / 2e-16 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10028679 [exp] 77 / 2e-15 AT5G61890 130 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Lus10014054 [exp] 74 / 6e-15 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10037448 [exp] 75 / 7e-15 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10003601 [exp] 74 / 8e-15 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008214 [exp] 73 / 1e-14 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.005G087200.2 pacid=42803093 polypeptide=Potri.005G087200.2.p locus=Potri.005G087200 ID=Potri.005G087200.2.v4.1 annot-version=v4.1 ATGCTTTCTGGGTTGAATAGGGAAAGAGAGATGTCAGTTATGGTGACTGCTTTGACACATGTAGTGGCTGGAAATGTGCCTGCAGATGATTCTGATTGCA TAAGTGAAGCATTTCCAAATAATCAAGATAATTGTGCTCATGGTGATTTGTCAGCGAAGAGAGAAAGGGAAGAAGGGGGTGGTGGCAGTGAAGAGTATAA AAGGCACGGTAGAGCATTTGGCGATGACTTCTTGCATGGGGGCTCATCTTCTGCTGGAAGAGCCTCAGGAAAATCCATCATCACCATGACACCTGCAGCC ACACGGATGGCATTCACCCCCGTATATGAATATAATGAAACCTGCAGAGACGAGCCGAGGAGAAAATACAGGGGAGTGAGGCAAAGGCCATGGGGCAAGT GGGCTGCTGAAATAAGGGATCCATTCAAGGCATGTAGAGTTTGGTTAGGCACTTTCGACACAGCTGAGGCTGCAGCAAGAGCCTATGATGAAGCCGCTCT CAGATTTAGAGGCAACAAGGCCAAACTAAACTTCCCAGAAAACGTCAAGCTACGACCGACTCCCCCAAATCCAATAGCAAACCAGTTGACCGTCTCTGAT TCTCCGAGTAGCACCGGCCTTCTGTCCGTTCCTACATCCACCGAGGCCATAGTTCATTCCCAAGCTCTTCACCATACGCAGAACCGTGAGATTTCAAGAG AGCAGGTGAACCAACCTCAATTGATCTTAGGTGTTGGTGGCTATCAAAGGCAACCCATGAGTCTATACGACCAAATGTTTCTGTCACCTCCACTTGTTTC GTCTTATCCTTCGATGTCTTCTTCAACAGAGTATTCCGATCCTATGTTTTTACCAGCTCAGCAACCAGGCGAGATTATGCCTGCCACTAGTAGCCAAAGT GGTGGGGAAGAATTTCAGTTGCCAGCGTGGTCAGATTATAGCCATTACTATACTTCGTCTTCTGGATAG
AA sequence Show only first row Show all	>Potri.005G087200.2 pacid=42803093 polypeptide=Potri.005G087200.2.p locus=Potri.005G087200 ID=Potri.005G087200.2.v4.1 annot-version=v4.1 MLSGLNREREMSVMVTALTHVVAGNVPADDSDCISEAFPNNQDNCAHGDLSAKREREEGGGGSEEYKRHGRAFGDDFLHGGSSSAGRASGKSIITMTPAA TRMAFTPVYEYNETCRDEPRRKYRGVRQRPWGKWAAEIRDPFKACRVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVKLRPTPPNPIANQLTVSD SPSSTGLLSVPTSTEAIVHSQALHHTQNREISREQVNQPQLILGVGGYQRQPMSLYDQMFLSPPLVSSYPSMSSSTEYSDPMFLPAQQPGEIMPATSSQS GGEEFQLPAWSDYSHYYTSSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.005G087200 [exp]	0	1
AT5G39890			Protein of unknown function (D...		Potri.017G079400 [exp]	2.64	0.7917
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Potri.003G108500 [exp]	4.24	0.7948	Pt-TIP5.1
AT3G10040	Trihelix		sequence-specific DNA binding ...		Potri.016G096300 [exp]	5.56	0.8394
					Potri.017G080801 [exp]	18.00	0.8135
AT5G54830			DOMON domain-containing protei...		Potri.006G262300 [exp]	19.59	0.7349
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.001G199000 [exp]	22.00	0.7099
AT5G62520		SRO5	similar to RCD one 5 (.1.2)		Potri.015G076500 [exp]	23.87	0.7783
AT5G03890			unknown protein		Potri.015G005700 [exp]	25.45	0.8103
AT4G27340			Met-10+ like family protein (....		Potri.001G408950 [exp]	29.24	0.7993
AT1G61140		EDA16	embryo sac development arrest ...		Potri.004G037700 [exp]	35.32	0.7898

Compare expression of checked genes

Potri.005G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.